Job Description P21517 Confidence 99.09% Date Thu Jan 5 11:38:27 GMT 2012 Rank 111 Aligned Residues 312 % Identity 15% Template c3mi6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	.	V	F	K	A	P	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H
Query Conservation																										.
Alig confidence																										.																									.	.
Template Conservation																																																			.	.
Template Sequence		N	E	A	K	L	X	T	I	V	N	Q	A	K	R	L	G	I	E	X	F	V	L	D	D	G	W	F	G	H	R	D	D	D	T	T	S	L	G	D	W	F	V	D	Q	R	K	F	P	D	.	.	G	I	E	H	F	S	Q	A	V	H	Q	Q	G	X	K	F	G	L	W	F	E	P	E	X	V	S	V	D	S
Template Known Secondary structure																	T								T	T		B	T	T		S	S	T	T	S		T	T			S	B		T	T	T		T	T	.	.												T	T									T	T				S	S	S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Sequence		D	L	Y	Q	Q	H	P	D	W	L	I	H	A	P	K	S	T	P	T	P	G	R	H	Q	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	X	A	R	P	E	V	V	D	Y	L	F	K	L	X	S	Q	X	I	E	.	.	.	.	.	S	A	N	L	D	Y	I	K	W	D
Template Known Secondary structure		S						G	G	G	B				T	T						S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		T	T																		.	.	.	.	.			T		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.																			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.						470	.	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.												.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	H	M	L	G	E	A	G	G	A	R	.	.	.	.	.	.	.	.	.	.	.	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	N	R	Y	A	T	E	X	F	S	S	R	L	T	S	D	Q	Q	L	E	L	P	H	R	Y	I	L	G	V	Y	Q	L	Y	A	R	L	T	Q	A	Y	P	N	V	L	F	E	S	C	A	S	G	G	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	L	G	X	X	Y	Y	A	P
Template Known Secondary structure				S				S				S	S	S		G	G	G	G	G	G																					T	T							S	T	T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S							S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.																	.	.	.	.	.	.	540	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V
Query Conservation
Alig confidence							.	.	.																																										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation							.	.	.																																										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Sequence		Q	A	W	T	S	.	.	.	D	D	T	D	A	A	E	R	L	L	I	Q	F	G	T	S	Y	G	Y	P	Q	A	X	X	G	A	H	V	S	A	V	P	N	D	Q	X	G	R	I	T	S	.	.	.	.	.	.	.	.	.	.	L	K	T	R	G	A	V	A	F	F	G	D	L	G	Y	E	.	.	.	.	.
Template Known Secondary structure							.	.	.	S															T	T	T	S		G	G	G								S	S		T	T	T						.	.	.	.	.	.	.	.	.	.									T	S	S						.	.	.	.	.
Template Predicted Secondary structure							.	.	.																																										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template SS confidence
		544	.	.	.	.				.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.											590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.	.	.	.	.	.	.					.	.	540	.	.	.			.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.														.	.	.	.							.	.
Query SS confidence																																									.														.	.	.	.							.	.
Query Sequence		G	L	D	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	.	Q	A	L	R	H	G	G	C	Q	V	L	Y	A	.	.	.	.	E	D	N	V	V	V	.	.	F	V	R	V	L	N	Q	Q	R	V	L	V	A	I	N
Query Conservation																																									.														.	.	.	.							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.														.	.	.	.							.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	T	K	X	A	P	T	E	L	D	Q	V	K	K	Q	V	A	F	Y	K	C	Y	R	Q	L	F	Q	F	G	K	F	Y	R	I	D	S	P	F	V	E	D	G	N	V	T	S	W	Q	V	V	S	D	D	Q	K	Q	A	I	A	A	R	Y	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	T	T																			T							S						S		T	T	S	T	T											T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
		559	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	N	H	P
Template Known Secondary structure		S	S			S
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions