|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
. | . | . | . | . | . | . | . | . | 40 | |
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
 |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | V | A | Y | A | D | F | A | R | L | E | M | R | V | G | K | I | V | E | V | K | R | H | E | N | A | D | K | . |
L | Y | I | V | Q | V | D | V | G | Q | . |
K | T | L | Q | T | V | T | S | L | V | P | Y | Y | S | E | E | E | L | M | G | K | T | V | V | V | L | C | N | L | Q | K | A | K | M | R | G | E | T | S | E |
Query Conservation |   |
  |
|   |   |   |
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|   |   |
|
|   |
|
|
| . |
|   |
|   |   |
|
|   |
|   | . |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|   |   |
|
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|   |   |
|
|   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|   |   |
|   |
|
|
|   |
|
|
Template Sequence |   |
M | T | P | L | E | A | F | Q | I | L | D | L | R | V | G | R | V | L | R | A | E | P | H | E | K | A | R | K | P | S | Y | K | L | W | V | D | L | G | P | L | G | V | K | Q | S | S | A | Q | I | T | E | L | Y | R | P | E | D | L | V | G | R | L | V | V | C | A | V | N | L | G | A | K | R | V | A | G | F | L | S | E |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| S | S |
|
|  |  |  |  |  |  |
| G | G | G |
|  |  |  |  |  |  |
|
| T | T | T |
|
|  |  |  |  | T | T |
|  |  |  |  |  |
| S | S |
|
|  |  |  | T | T |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | M | L | L | C | A | E | T | D | D | G | S | E | S | V | L | L | T | P | E | R | M | M | P | A | G | V | R | V |
Query Conservation |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   |   |   |   |   | . |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
V | L | V | L | G | V | P | D | E | A | G | . |
R | V | V | L | L | A | P | D | R | E | V | P | L | G | G | K | V |
Template Known Secondary structure |   |
S |  |  |
|  |  |  |
| T | T | S | . |
|  |  |  |
|
|
| S | S |
|
|
| T | T |
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | |
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |