Job Description P0AGJ9 Confidence 98.05% Date Thu Jan 5 11:29:21 GMT 2012 Rank 54 Aligned Residues 212 % Identity 17% Template c3sp1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi Resolution 2.55 Å

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		32	.	.	.	.	.	.		.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure									.						.	.														.	.	.	.
Query SS confidence									.						.	.														.	.	.	.
Query Sequence		G	P	I	A	L	Y	C	.	G	F	D	P	T	.	.	A	D	S	L	H	L	G	H	L	V	P	L	L	.	.	.	.	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I
Query Conservation									.						.	.														.	.	.	.
Alig confidence									.		.	.			.	.			.											.	.	.	.																			.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.							.																																	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	V	K	V	Y	A	C	G	.	.	P	T	V	Y	N	Y	.	A	H	I	G	N	F	R	T	Y	I	F	G	D	L	L	I	K	T	L	R	F	L	G	Y	K	V	N	Y	A	M	N	I	.	.	T	D	I	G	H	G	L	.	.	.	.	.	.	.	.	.	.	.	.	T	V	Y	E	I	S	E	F	F
Template Known Secondary structure		S									.	.		B	S	S	S		.																						T	T										.	.	B		S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.							.																																	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.			.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.
		105	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure											.																													.	.	.	.																																		.	.	.	.	.
Query SS confidence											.																													.	.	.	.																																		.	.	.	.	.
Query Sequence		R	K	Q	V	A	P	F	L	D	.	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	.	.	.	.	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	.	.	.	.	.
Query Conservation											.																													.	.	.	.																																		.	.	.	.	.
Alig confidence											.																													.	.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		T	E	A	F	F	N	D	C	R	K	L	N	I	V	Y	P	D	K	V	L	V	A	S	K	H	I	P	I	M	I	E	V	V	K	I	L	E	E	K	K	I	T	Y	F	S	N	G	N	V	Y	F	D	T	S	C	F	K	S	Y	G	E	M	A	G	I	K	F	K	R	N	K	T	D	F	V	L	W	F	T	N
Template Known Secondary structure												T	T					S					G	G	G															T	T						T	T						G	G	G		T	T	T	T	G	G	G					S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
																						175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.																					.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.																					.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	.	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	.	.	F	G	L	T	V	P	L	I	T	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.																					.	.										.
Template Conservation																																					.																																											.
Template Sequence		S	K	F	K	D	Q	E	M	K	W	D	S	P	W	G	F	G	Y	P	S	W	H	L	E	C	A	A	M	N	L	E	Y	F	K	D	.	A	L	D	I	H	L	G	G	V	D	H	I	G	V	H	H	I	N	E	I	A	I	A	E	C	F	L	N	K	K	W	C	D	V	F	V	H	G	E	F	L	I	.	M
Template Known Secondary structure		S				T	T				B			T	T		S																		T	T	.									G	G	G	T	T	T														T	S				S										.	S
Template Predicted Secondary structure																																					.																																											.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	T	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		D	Y	N	K	M	S	F	I	T	V	K	D	L	E	D	Q	.	.	N	F	S	P	L	D	F	R	Y	L	C	L	T	S	H
Template Known Secondary structure		S	S	S	B												T	.	.	T												T	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions