Return to main results Retrieve Phyre Job Id

Job DescriptionQ47083
Confidence90.88%DateThu Jan 5 12:36:11 GMT 2012
Rank191Aligned Residues86
% Identity15%Templated1ku9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10....... ..20.........30.........40.........50... ......60.........70..
Predicted Secondary structure 



..







......






Query SS confidence 
















. .



































. . . . . .


















Query Sequence  MNFQQLKIIREAARQDY. . NLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRG. . . . . . KRLLGMTEPGKALLVIAER
Query Conservation 
 
  
  
  

   
..
 
 

  
 


 


  
  

  

  

 
  ......   
 

  
  
   
  
Alig confidence 
















..
























...







......


















Template Conservation 
      

  
       
  


  
 



 

  
  

 ... 


 
     


      
            
Template Sequence  LNKSVGAVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEE. . . LGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRK
Template Known Secondary structure 


SS
T

...TTS

TT
SS


Template Predicted Secondary structure 












...






Template SS confidence 















































































   24.....30.........40.........50.........60....... ..70.........80.........90.........100
 
   73......80.........
Predicted Secondary structure 
Query SS confidence 
















Query Sequence  ILNEASNVRRLADLFTN
Query Conservation                   
Alig confidence 
















Template Conservation            
      
Template Sequence  HDLIAKTYEDLKKLEEK
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
















   101........110.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions