Job Description Q47083 Confidence 99.76% Date Thu Jan 5 12:36:11 GMT 2012 Rank 21 Aligned Residues 206 % Identity 16% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	T	S	G	V	L	T	I	A	T	T	H	T	Q	A	R	Y	S	L	P	E	V	I	K	A	F	R	E	L	F	P	E	V	R	L	E	L	I	Q	G	T	P	Q	E	I	A	T	L	L	Q	N	G	E	A	D	I	G	I	A	S	E	R	L	S	N	D	P	Q	L	V	A	F	P	W	F	R	W	H	H
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	.	P	V	E	P	L	R	S	E	I	L	G	R	V	G	V
Template Known Secondary structure			S																T														T	T										G	G	G							T	S			S							S	S	.			T	T	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	L	V	P	H	D	H	P	L	T	Q	I	S	P	L	T	L	E	S	I	A	K	W	P	L	I	T	Y	R	Q	G	I	T	G	R	S	R	I	D	D	A	F	A	R	K	G	L	L	A	D	I	V	L	S	A	Q	D	S	D	V	I	K	T	Y	V	A	L	G	L	G	I	G	L	V	A	E	Q	S	S
Query Conservation
Alig confidence											.																																											.
Template Conservation											.																																											.
Template Sequence		L	C	L	L	S	K	Q	H	P	.	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	.	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A
Template Known Secondary structure							T	T	S	G	.	G	G	S	S										S						S													T	S	S	S							.				S										T	T	S
Template Predicted Secondary structure											.																																											.
Template SS confidence
		191	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		249	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	E	Q	E	E	.	E	N	L	I	R	L	D	T	R	H	L	F	D	A	N	T	V	W	L	G	L	K	R	G	Q	L	Q	R	N	Y	V	W	R	F	L	E	L	C	N	A	G	L	S	V
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S	R
Template Known Secondary structure									T							S	S													G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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