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Job DescriptionQ47083
Confidence79.77%DateThu Jan 5 12:36:11 GMT 2012
Rank221Aligned Residues204
% Identity10%Templatec3k2dA_
PDB info PDB header:immune systemChain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  TNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWH
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Template Sequence  GHMDTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTI
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   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   168.170.........180.........190.........200.........210........ .220........
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Query Sequence  HSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLA. . . . . . . . . . . . . . . . . . . DIVLSAQDSD
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Template Sequence  AGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKNITIMELDAA
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   229230.........240.........250.........260.........270.........280.........290.
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Query Sequence  VIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELC
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Template Sequence  QLPRSLDDVALSIINTTYASSINLTPEKDGVFVEDKESPYVNLIVARQDNVQNENVQNFVKAY
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   186...190.........200.........210.........220.........230.........240........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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