Job Description Q47083 Confidence 20.72% Date Thu Jan 5 12:36:11 GMT 2012 Rank 421 Aligned Residues 172 % Identity 8% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		Q	E	I	A	T	L	L	Q	N	G	E	A	D	I	G	.	.	.	I	A	S	E	R	L	S	N	D	P	Q	L	V	A	F	P	W	F	R	W	H	H	S	L	L	V	P	H	D	H	P	L	T	Q	I	S	P	L	T	L	E	S	I	A	K	W	P	L	I	T	Y	R	Q	G	I	T	G	R	S	R	I	D
Query Conservation																	.	.	.
Alig confidence																	.	.	.
Template Conservation
Template Sequence		T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V	I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V
Template Known Secondary structure											T	S		S				S	S		B							T	T	S				S		S											T	T	S					S	T	T						S			T	T						B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		D	A	F	A	R	K	G	L	L	A	D	I	V	L	S	A	Q	D	S	D	V	I	K	T	Y	V	A	L	G	L	G	.	.	.	.	.	I	G	L	V	A	E	Q	S	S	G	E	Q	E	E	E	N	L	I	R	L	D	T	R	H	L	F	D	A	N	T	V	W	L	G	L	K	R	G	Q	L	Q	R	N	Y
Query Conservation																																	.	.	.	.	.
Alig confidence																																	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	K	L	L	T	V	G	K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	L	T	S	N
Template Known Secondary structure													G	G	G		B	S	S										S	S	S				S																	S	S							S														T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	R	F	L	E	L	C	N	A	G	L	S	V	E	D	I	K	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	E	L	I	S	Q	Y	K	S	H	G	F	M	D	V	L	H	D	K
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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