Job Description P32154 Confidence 100.00% Date Thu Jan 5 11:49:34 GMT 2012 Rank 3 Aligned Residues 360 % Identity 14% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	V	Q	S	G	S	V	M	S	H	L	M	A	G	V	S	A	A	L	P	F	V	I	G	G	G	I	L	V	A	L	A	N	M	L	V	Q	F	G	L	P	Y	T	D	M	S	K	G	A	P	S	F	T	W	V	V	E	S	I	G	Y	L	G	F	T	F	M	I	P	I	M	G	A	Y	I	A	S	S	I
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	.	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L
Template Known Secondary structure																		G	G	G	T	T													T				T	.	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		201	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.																							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.
Predicted Secondary structure										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		A	D	K	P	A	F	A	P	.	.	A	F	L	V	C	Y	L	A	N	D	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	T	Q	S	G	A	G	F	L	G	A	V	V	L	G	L	A	I	G	Y	F	V	F	W	F	R	K	.	.	.	.	V	R	L
Query Conservation										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M
Template Known Secondary structure						T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T																					T	T		S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	A	L	Q	P	L	L	G	S	M	L	I	P	F	V	T	L	L	V	F	G	V	L	T	Y	Y	V	I	G	P	V	M	S	D	L	M	G	G	L	L	H	F	L	N	T	I	P	P	S	.	.	.	.	.	.	.	.	.	.	M	K	F	A	A	A	F	L	V	G	A	M	L	A	F	D	M	G	G	P
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A
Template Known Secondary structure			T	T	S																														T	S	S	S		S									T	T	T								S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.																		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	K	T	A	W	F	F	C	F	S	L	L	E	K	H	I	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Y	A	I	V	G	V	V	A	L	M	P	P	V	A	A	G	L	A	T	F	I	A	P	K	L	F	T	R	Q	E	K	E	A	A	S	S	A	I	V	V	G	A	T
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																																															.	.
Template Sequence		T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	.	.	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F
Template Known Secondary structure				T																					T	T						S										T	S		S	S	S	S	S	T													.	.	S										T	S					T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		386	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430							.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure											.	.														.	.																								.	.	.	.	.	.
Query SS confidence											.	.														.	.																								.	.	.	.	.	.
Query Sequence		V	A	T	E	P	A	I	P	Y	.	.	A	L	A	A	P	L	P	M	I	T	A	N	T	.	.	L	A	G	G	I	T	G	V	L	V	I	A	F	G	I	K	R	L	A	P	G	L	G	.	.	.	.	.	.	I	F	D	P	L	I	G	L	M	S	P	V	G	S	F	Y	L	V	L	A	I	G	L	A	L
Query Conservation											.	.														.	.																								.	.	.	.	.	.
Alig confidence											.	.														.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L
Template Known Secondary structure		T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	S	F	I	I	V	L	K	G	L	W	L	R	R	K	A	K	A	A	Q	Q	E	L	V	H	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure																						T	T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.