Job Description P31600 Confidence 95.79% Date Wed Jan 25 15:20:48 GMT 2012 Rank 115 Aligned Residues 246 % Identity 13% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

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		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.							.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.																														.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.																														.	.	.	.	.	.	.
Query Sequence		L	A	E	Q	R	Q	W	Q	S	Q	L	P	G	I	A	D	N	C	P	A	I	V	R	L	L	G	D	M	S	P	S	Y	D	A	A	A	W	N	.	.	.	.	.	.	R	L	A	K	C	Y	R	D	T	L	P	G	V	A	L	Y	A	W	L	Q	A	E	Q	R	Q	P	S	A	W	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.																														.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	L	Q	Q	G	E	L	Y	K	Q	E	G	K	A	K	E	L	A	D	L	I	K	V	T	R	P	F	L	S	S	I	S	K	A	K	A	A	K	L	V	R	S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A	K	Q	E	K	R	T	F	L	R	Q	S
Template Known Secondary structure													T	T																	T	T	S																		T	S																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.								.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.				.	.	.	.	.	580	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																														.	.	.								.	.
Query SS confidence																																		.	.	.	.	.	.	.																														.	.	.								.	.
Query Sequence		Q	H	R	A	V	A	Y	Q	A	Y	Q	V	E	D	Y	A	T	A	L	A	A	W	Q	K	I	S	L	H	D	M	S	N	.	.	.	.	.	.	.	E	D	L	L	A	A	A	N	T	A	Q	A	A	G	N	G	A	A	R	D	R	W	L	Q	Q	A	E	K	R	.	.	.	G	L	G	S	N	A	L	.	.
Query Conservation																																		.	.	.	.	.	.	.																														.	.	.								.	.
Alig confidence																																		.	.	.	.	.	.	.																														.	.	.								.	.
Template Conservation
Template Sequence		L	E	A	R	L	I	A	L	Y	F	D	T	A	L	Y	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	V	E	V	Q	L	L	E	S	K	T	Y	H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A	R	T	T	A	N	A	I	Y	C	P	P	K	V	Q	G
Template Known Secondary structure														T																		T	S	S		T																	T	T																			S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
				582	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.									.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure		.	.											.																								.	.	.	.	.	.	.	.
Query SS confidence		.	.											.																								.	.	.	.	.	.	.	.
Query Sequence		.	.	Y	W	W	L	H	A	Q	R	Y	I	.	P	G	Q	P	E	L	A	L	N	D	L	T	R	S	I	N	I	A	P	S	A	N	A	.	.	.	.	.	.	.	.	Y	V	A	R	A	T	I	Y	R	Q	R	H	N	V	P	A	A	V	S	D	L	R	A	A	L	E	L	E	P	N	N	S	N	T	Q	A
Query Conservation		.	.											.																								.	.	.	.	.	.	.	.
Alig confidence		.	.											.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	D	L	Q	S	G	I	L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V	D	S	V	K	A	L	T	S	L	K	Y	M	L	L	C	K	I	M	L	G	Q	S	D	D	V	N	Q	L	V	S	G	K	L	A	I	T	Y	S	G	R	D	I	D	A	M	K
Template Known Secondary structure														T	T																		T	T	T																			T	T		T	T								S					T	T		S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	Y	A	L	W	D	S	G	D	I	A	Q	S	R	E	M	L	E	P	A	H	K	G	L	P	D	D	P	A	L	I	R	Q	L	A	Y	V	N	Q	R	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		S	V	A	E	A	S	H	K	.	R	S	L	A	D	F	Q	A	A	L	K	E	Y	K	K	E	L	A	E	D	V	I	V	Q	A	H	L	G	T	L	Y	D	T	M
Template Known Secondary structure										.	T												T	T	T	T	T	T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		289	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions