Job Description P31600 Confidence 78.90% Date Wed Jan 25 15:20:48 GMT 2012 Rank 128 Aligned Residues 115 % Identity 16% Template c3mv2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 2.90 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																						80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.			.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.									.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.									.	.
Query Sequence		L	D	K	A	L	K	A	Q	K	N	N	D	E	A	T	A	I	R	E	F	E	Y	I	H	Q	Q	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	P	L	T	L	Y	L	A	E	A	Y	R	H	.	.	.	F	G	H	D	D	R	A	R	.	.	L	L	L
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.									.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.						.	.	.									.	.
Template Conservation																																																											.	.
Template Sequence		M	N	E	G	Y	K	N	F	K	L	N	K	P	D	I	A	I	E	C	F	R	E	A	I	Y	R	I	T	L	L	M	V	D	D	A	E	D	E	K	L	A	H	K	I	L	E	T	A	R	E	Y	I	L	G	L	S	I	.	.	E	L	E	R	R	S	L	K	E	G	N	T	V	R	M	L	E	L	A	A	Y
Template Known Secondary structure											T	T																		T			B		S	S																							.	.						T			T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		994	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050			.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.
		105	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		E	D	Q	L	K	R	H	P	G	D	A	R	L	.	E	R	S	L	A	A	I	P	V	E	V	K	S	V	T	T	V	E	E	L	L	A	Q	Q	K	A	C	D	A	A	P	T	L	R	C	R	S	E	V	G	Q	N	A	L	R	L	A	Q	L	P
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		F	T	K	A	K	L	S	P	I	H	R	T	N	A	L	Q	V	A	M	S	Q	H	F	K	H	K	N	F	L	Q	A	S	Y	F	A	G	E	F	L	K	I	I	S	S	G	P	R	A	E	Q	A	R	K	I	K	N	K	A	D	S	M	A	S	D
Template Known Secondary structure		G	G	G	S																					T	T														T	T			S	S															T	S
Template Predicted Secondary structure
Template SS confidence
		1072	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions