Job Description P31600 Confidence 58.57% Date Wed Jan 25 15:20:48 GMT 2012 Rank 139 Aligned Residues 115 % Identity 14% Template c3mkrB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																														.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	D	K	A	L	K	A	Q	K	N	N	D	E	A	T	A	I	R	E	F	E	Y	I	H	Q	Q	V	.	.	.	.	P	D	N	I	P	L	T	L	Y	L	A	E	A	Y	R	H	F	G	H	D	D	R	A	R	L	L	L	E	D	Q	L	K	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.																											.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.
Template Sequence		R	L	Q	L	C	Y	Q	L	T	T	V	G	K	F	E	E	A	V	E	K	F	R	S	I	L	L	S	V	P	L	L	V	V	D	N	K	Q	E	I	A	E	A	Q	Q	L	I	T	I	C	R	E	Y	I	V	G	L	S	M	.	.	.	E	T	E	R	K	K	L	P	K	E	T	L	E	Q	Q	K	R	I	C
Template Known Secondary structure												T	T																G	G	G					S																								.	.	.					T	T	S				S
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		1009	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.				.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.
															112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	D	A	R	L	E	R	S	L	A	A	I	P	V	E	V	K	S	V	T	T	V	E	E	L	L	A	Q	Q	K	A	C	D	A	A	P	T	L	R	C	R	S	E	V	G	Q	N	A	L	R	L	A	Q	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	A	A	Y	F	T	H	S	N	L	Q	P	V	H	M	I	L	V	L	R	T	A	L	N	L	F	F	K	L	K	N	F	R	T	A	A	A	F	A	R	R	L	L	E	L	G	P	K	P	E	V	A	Q	Q	T	R	K	I	L	S	A	C	E	K	N	P	T	D
Template Known Secondary structure								T	T	S																					T	T	B														T																				S			B
Template Predicted Secondary structure
Template SS confidence
		1086	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions