Job Description P31600 Confidence 94.19% Date Wed Jan 25 15:20:48 GMT 2012 Rank 117 Aligned Residues 142 % Identity 15% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	N	T	A	Q	A	A	G	N	G	A	A	R	D	R	W	L	Q	Q	A	E	K	R	G	L	G	S	N	A	L	Y	W	W	L	H	A	Q	R	Y	I	P	G	Q	P	E	L	A	L	N	D	L	T	R	S	I	N	I	A	P	S	A	N	A	Y	V	A	R	A	T	I	Y	R	Q	R	H	N	V	P
Query Conservation
Alig confidence																								.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.																														.	.	.	.	.	.	.
Template Sequence		I	R	F	D	L	A	L	E	Y	G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	Q	.	.	.	.	.	.	.	H	S	F	D	K	L	S	F	L	Y	L	V	T	G	D	V	N
Template Known Secondary structure										T	T													.	.	.	.	.																T	T												T	.	.	.	.	.	.	.	T													T
Template Predicted Secondary structure																								.	.	.	.	.																														.	.	.	.	.	.	.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.						.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.								.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	S	D	L	R	A	A	L	E	L	E	P	N	N	S	N	T	Q	A	A	L	G	Y	A	L	W	D	S	G	D	I	A	Q	S	R	E	M	L	E	P	A	H	K	G	L	P	D	D	P	A	L	I	R	Q	L	A	Y	V	N	Q	R	L	D	D	M	P	A	T	Q	H	Y	A	R	L	V	I	D	D
Query Conservation
Alig confidence																								.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		K	L	S	K	M	Q	N	I	A	Q	T	R	E	D	F	G	S	M	L	L	N	T	.	.	.	.	.	F	Y	N	N	S	T	K	E	R	S	S	I	F	A	E	G	G	S	L	.	.	.	.	.	.	.	.	P	L	A	Y	A	V	A	K	A	N	G	D	E	A	A	A	S	A	F	L	E	Q	A	E	V	D
Template Known Secondary structure													T	T										.	.	.	.	.				T												T	T			.	.	.	.	.	.	.	.										T	T												T	T
Template Predicted Secondary structure																								.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740						.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.									760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
		710	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	N	Q	A	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	D	V	T	L	P
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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