Job Description P31600 Confidence 99.08% Date Wed Jan 25 15:20:48 GMT 2012 Rank 90 Aligned Residues 265 % Identity 12% Template c3e4bD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r Resolution 2.50 Å

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		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.					.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.		.	.	.	.	.	.	500	.
Predicted Secondary structure																																						.	.	.	.																																.
Query SS confidence																																						.	.	.	.																																.
Query Sequence		E	S	H	P	Y	L	A	T	P	A	K	V	A	I	L	S	K	P	L	P	L	A	E	Q	R	Q	W	Q	S	Q	L	P	G	I	A	D	.	.	.	.	N	C	P	A	I	V	R	L	L	G	D	M	S	P	S	Y	D	A	A	A	W	N	R	L	A	K	C	Y	R	D	T	.	L	P	G	V	A	L	Y	A
Query Conservation																																						.	.	.	.																																.
Alig confidence																																						.	.	.	.										.	.	.																				.
Template Conservation																																																			.	.	.
Template Sequence		E	A	Q	V	G	L	Q	Q	Q	I	S	Q	W	Q	A	A	G	Y	P	E	A	G	L	A	Q	V	L	L	Y	R	T	Q	G	T	Y	D	Q	H	L	D	D	V	E	R	I	C	K	A	A	.	.	.	L	N	T	T	D	I	C	Y	V	E	L	A	T	V	Y	Q	K	Q	P	E	Q	Q	A	E	L	L	K	Q
Template Known Secondary structure		S	T	T	T					T	T	T	T	T	T	T	T	T		T	T													S		T	T	T													.	.	.	T	T	T		T	T													G	G	G
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.					.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.				.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure																											.	.	.	.																																.	.	.
Query SS confidence																											.	.	.	.																																.	.	.
Query Sequence		W	L	Q	A	E	Q	R	Q	P	S	A	W	Q	H	R	A	V	A	Y	Q	A	Y	Q	V	E	.	.	.	.	D	Y	A	T	A	L	A	A	W	Q	K	I	S	L	H	D	M	S	N	E	D	L	L	A	A	A	N	T	A	Q	A	.	.	.	A	G	N	G	A	A	R	D	R	W	L	Q	Q	A	E	K	R
Query Conservation																											.	.	.	.																																.	.	.
Alig confidence																											.	.	.	.															.																	.	.	.
Template Conservation																																													.
Template Sequence		M	E	A	G	V	S	R	G	T	V	T	A	Q	R	V	D	S	V	A	R	V	L	G	D	A	T	L	G	T	P	D	E	K	T	A	Q	A	L	L	E	K	I	A	.	P	G	Y	P	A	S	W	V	S	L	A	Q	L	L	Y	D	F	P	E	L	G	D	V	E	Q	M	M	K	Y	L	D	N	G	R	A	A
Template Known Secondary structure									T		S													T		T	T	S	S	S														T	.	T	T	S	T														T	T	S																T
Template Predicted Secondary structure																																													.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.					.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.					.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																	.	.	.	.
Query SS confidence																				.	.	.	.																																	.	.	.	.
Query Sequence		G	L	G	S	N	A	L	Y	W	W	L	H	A	Q	R	Y	I	P	.	.	.	.	G	Q	P	E	L	A	L	N	D	L	T	R	S	I	N	I	A	P	S	A	N	A	Y	V	A	R	A	T	I	Y	R	Q	.	.	.	.	R	H	N	V	P	A	A	V	S	D	L	R	A	A	L	E	L	E	P	N	N	S
Query Conservation																				.	.	.	.																																	.	.	.	.
Alig confidence			.	.																.	.	.	.																			.	.													.	.	.	.																			.	.
Template Conservation			.	.																																						.	.																																			.	.
Template Sequence		D	.	.	Q	P	R	A	E	L	L	L	G	K	L	Y	Y	E	G	K	W	V	P	A	D	A	K	A	A	E	A	H	F	E	K	A	V	G	R	E	V	.	.	A	A	D	Y	Y	L	G	Q	I	Y	R	R	G	Y	L	G	K	V	Y	P	Q	K	A	L	D	H	L	L	T	A	A	R	N	G	.	.	Q	N
Template Known Secondary structure		T	.	.																S	S	S													T	T	T	T	T			.	.													T	T	T	S	S																T	T	.	.		T
Template Predicted Secondary structure			.	.																																						.	.																																			.	.
Template SS confidence
		281			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.
		647	.	.	650	.	.	.	.	.	.	.	.					.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.			.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																																				.	.
Query SS confidence														.	.	.	.																																				.	.
Query Sequence		N	T	Q	A	A	L	G	Y	A	L	W	D	.	.	.	.	S	G	D	I	A	Q	S	R	E	M	L	E	P	A	H	K	G	L	P	D	D	P	A	L	I	R	Q	L	A	Y	V	N	Q	R	L	.	.	D	D	M	P	A	T	Q	H	Y	A	R	L
Query Conservation														.	.	.	.																																				.	.
Alig confidence														.	.	.	.															.	.	.	.																		.	.
Template Conservation																																.	.	.	.
Template Sequence		S	A	D	F	A	I	A	Q	L	F	S	Q	G	K	G	T	K	P	D	P	L	N	A	Y	V	F	S	Q	L	A	.	.	.	.	K	A	T	P	E	A	N	D	L	A	T	Q	L	E	A	P	L	T	P	A	Q	R	A	E	G	Q	R	L	V	Q	Q
Template Known Secondary structure		T									T	T	S		T	T	S														T	.	.	.	.	T														T	T	S
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.					.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions