Job Description P31600 Confidence 24.61% Date Wed Jan 25 15:20:48 GMT 2012 Rank 167 Aligned Residues 126 % Identity 10% Template c2f1tB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	D	T	M	L	R	A	S	A	S	F	F	N	G	G	K	Y	S	D	E	W	H	P	N	G	S	G	W	F	A	Q	N	L	Y	L	D	A	A	Q	Y	I	R	Q	D	I	Q	A	W	T	A	D	Y	R	V	S	W	H	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																				.	.	.	.								.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																				.	.	.	.								.
Template Sequence		A	G	E	F	F	M	R	A	G	S	A	T	V	R	.	P	T	E	G	G	G	F	S	V	T	N	N	T	Q	L	G	L	T	F	.	.	.	.	T	Y	M	A	T	D	N	.	I	G	V	E	L	L	A	A	T	P	F	R	H	K	I	G	T	R	A	T	G	D	I	A	T	V	H	H	L	P	P	T	L	M
Template Known Secondary structure		T	T													.																				.	.	.	.						T	T	.									S									T	T	T
Template Predicted Secondary structure																.																				.	.	.	.								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
							909	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.																	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	V	A	N	G	Q	T	I	E	P	Y	A	H	V	Q	D	N	G	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	G	T	Q	G	A	Q	L	G	G	V	G	V	R	W	N	I	W	T	G	E	T	H	Y	D	A	W	P	H	K	V	S	L	G	V	E	Y	Q	H
Query Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence		A	Q	W	Y	F	G	D	A	S	S	K	F	R	P	Y	V	G	A	G	I	N	Y	T	T	F	F	D	N	G	F	N	D	H	G	K	E	A	G	L	S	D	L	S	L	K	D	S	W	G	A	A	G	Q	V	G	V	D	Y	L	I	N	R	D	.	.	.	.	.	.	.	.	W	L	V	N	M	S	V	W	Y
Template Known Secondary structure							S		T	T		S																										T	T																							S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.
											968	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.		.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	.	T	F	K	A	I	N	Q	R	N	G	E	R	N	N	A	F	L	.	T	I	G	V
Query Conservation		.	.	.	.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		M	D	I	D	T	T	A	N	Y	K	L	G	G	A	Q	Q	H	D	S	V	R	L	D	P	W	V	F	M	F	S	A
Template Known Secondary structure													S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions