Job Description P31600 Confidence 99.39% Date Wed Jan 25 15:20:48 GMT 2012 Rank 68 Aligned Residues 176 % Identity 10% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.		.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560											.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure																	.																	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	R	A	V	A	Y	Q	A	Y	Q	V	E	D	Y	.	A	T	A	L	A	A	W	Q	K	I	S	L	H	D	M	S	.	N	E	D	L	L	A	A	A	N	T	A	Q	A	A	G	N	.	.	.	.	.	.	.	.	.	.	G	A	A	R	D	R	W	L	Q	Q	A	E	K	R	G	L	G	S	N	A	L
Query Conservation																	.																	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P	K	S	Y	G	T
Template Known Secondary structure													S				S	S	T	T												T	T												G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		582	.	.	.	.	.	.	.	590	.	.	.	.			.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610		.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.		.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																	.																		.
Query SS confidence															.	.																	.																		.
Query Sequence		Y	W	W	L	H	A	Q	R	Y	I	P	G	Q	.	.	P	E	L	A	L	N	D	L	T	R	S	I	N	I	A	P	.	S	A	N	A	Y	V	A	R	A	T	I	Y	R	Q	R	H	N	.	V	P	A	A	V	S	D	L	R	A	A	L	E	L	E	P	N	N	S	N	T	Q	A	A	L	G	Y	A	L	W
Query Conservation															.	.																	.																		.
Alig confidence															.	.																	.																		.
Template Conservation
Template Sequence		W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S	L	I	T	R	N	F	S	N	Y	S	S	W	H	Y	R	S	C	L	L	P
Template Known Secondary structure													S	S		T																T	T															T	T																		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		658	.									660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence		D	S	.	.	.	.	.	.	.	.	G	D	I	A	Q	S	R	E	M	L	E	P	A	H	K	G	L	P	D	D	P	A	L	I	R	Q	L	A	Y	V
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N	A	F	F	T	D	P	N	D	Q	S	A	W	F	Y	H	R	W	L
Template Known Secondary structure		T	T					S	S														T						T	T											T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions