Email l.a.kelley@imperial.ac.uk Description P21365 Date Thu Jan 5 11:38:11 GMT 2012 Unique Job ID 2a8dc698076db141

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kvlA_ 23.2 26 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 2 c3hd7A_ 17.8 8 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 3 c1ciiA_ 13.5 18 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 4 d1k8rb_ 9.5 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 5 d2hgca1 9.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:YjcQ-like 6 c2hgcA_ 9.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yjcq protein; PDBTitle: solution nmr structure of the yjcq protein from bacillus2 subtilis. northeast structural genomics target sr346. 7 d1k8ke_ 8.7 8 Fold:Arp2/3 complex 21 kDa subunit ARPC3 Superfamily:Arp2/3 complex 21 kDa subunit ARPC3 Family:Arp2/3 complex 21 kDa subunit ARPC3 8 c1rh5C_ 8.6 17 PDB header:protein transport Chain: C: PDB Molecule:secbeta; PDBTitle: the structure of a protein conducting channel 9 d1rh5c_ 8.6 17 Fold:Single transmembrane helix Superfamily:Sec-beta subunit Family:Sec-beta subunit 10 c3go5A_ 8.2 0 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 11 d1pf4a2 8.2 5 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 12 c1m45B_ 8.2 6 PDB header:cell cycle protein Chain: B: PDB Molecule:iq2 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq2 of myo2p, a class v2 myosin 13 c1q2iA_ 7.7 0 PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells 14 c1unhD_ 7.4 71 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 15 d1unld_ 7.4 71 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 16 c1kq8A_ 7.3 19 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1 17 d1kq8a_ 7.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 18 c3jqoV_ 7.0 11 PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system 19 c4a1aM_ 7.0 5 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 20 c1zp0D_ 6.9 13 PDB header:oxidoreductase Chain: D: PDB Molecule:small cytochrome binding protein; PDBTitle: crystal structure of mitochondrial respiratory complex ii2 bound with 3-nitropropionate and 2-thenoyltrifluoroacetone 21 d1cg5a_ not modelled 6.8 21 Fold:Globin-like Superfamily:Globin-like Family:Globins 22 c3mkuA_ not modelled 6.6 13 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 23 c1e17A_ not modelled 6.4 10 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 24 c3co7C_ not modelled 6.2 16 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 25 d1myta_ not modelled 6.2 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 26 d2fx0a2 not modelled 6.1 0 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 27 d1hdsa_ not modelled 6.1 7 Fold:Globin-like Superfamily:Globin-like Family:Globins 28 c2lkeA_ not modelled 5.9 30 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails 29 c3g73A_ not modelled 5.9 10 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 30 c1geaA_ not modelled 5.9 25 PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21 31 c2ciuA_ not modelled 5.9 0 PDB header:protein transport Chain: A: PDB Molecule:import inner membrane translocase subunit tim21 PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae 32 c1n2dC_ not modelled 5.8 6 PDB header:cell cycle Chain: C: PDB Molecule:iq2 and iq3 motifs from myo2p, a class v myosin; PDBTitle: ternary complex of mlc1p bound to iq2 and iq3 of myo2p, a2 class v myosin 33 c2lkjA_ not modelled 5.6 33 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails 34 d2lhba_ not modelled 5.6 7 Fold:Globin-like Superfamily:Globin-like Family:Globins 35 d1d5va_ not modelled 5.6 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 36 c2wwbB_ not modelled 5.6 7 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 37 c2rlwA_ not modelled 5.6 14 PDB header:toxin Chain: A: PDB Molecule:plnf; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef 38 c2qq4A_ not modelled 5.5 20 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 39 c1yhuW_ not modelled 5.5 14 PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 40 d3bpya1 not modelled 5.5 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 41 d1scta_ not modelled 5.5 23 Fold:Globin-like Superfamily:Globin-like Family:Globins 42 d2hfha_ not modelled 5.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 43 c2zs1D_ not modelled 5.4 8 PDB header:oxygen storage, oxygen transport Chain: D: PDB Molecule:extracellular giant hemoglobin major globin subunit b1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 44 d1sxja1 not modelled 5.4 9 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 45 d1c17m_ not modelled 5.4 11 Fold:F1F0 ATP synthase subunit A Superfamily:F1F0 ATP synthase subunit A Family:F1F0 ATP synthase subunit A 46 c1g2cN_ not modelled 5.3 13 PDB header:viral protein Chain: N: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core 47 d2a07f1 not modelled 5.3 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 48 c2wukD_ not modelled 5.3 17 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 49 c2nq2A_ not modelled 5.3 16 PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 50 d1hbra_ not modelled 5.3 0 Fold:Globin-like Superfamily:Globin-like Family:Globins 51 c2c0kB_ not modelled 5.3 11 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis 52 c3gztF_ not modelled 5.2 28 PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp 53 c3bjqA_ not modelled 5.2 14 PDB header:viral protein Chain: A: PDB Molecule:phage-related protein; PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution 54 d2gdma_ not modelled 5.2 9 Fold:Globin-like Superfamily:Globin-like Family:Globins 55 c3h8aF_ not modelled 5.1 40 PDB header:lyase/protein binding Chain: F: PDB Molecule:rnase e; PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain