Job Description P0AAJ3 Confidence 98.57% Date Thu Jan 5 11:13:04 GMT 2012 Rank 47 Aligned Residues 129 % Identity 19% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.								.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.											.	.
Query SS confidence																				.	.	.	.	.	.	.											.	.
Query Sequence		E	T	Q	D	I	I	K	R	S	A	T	N	S	I	T	P	P	S	.	.	.	.	.	.	.	Q	V	R	D	Y	K	A	E	V	A	.	.	K	L	I	D	V	S	T	C	I	G	C	K	A	C	Q	V	A	C	S	E	W	N	D	I	R	D	E	V	G	H	C	V	G	V	Y	D	N	P	A	D	L	S	A
Query Conservation																				.	.	.	.	.	.	.											.	.
Alig confidence																				.	.	.	.	.	.	.											.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	Q	D	R	T	V	E	Y	G	L	Y	E	K	L	P	V	Y	T	R	F	E	F	T	R	R	H	V	D	K	H	H	P	L	S	P	F	V	I	L	D	R	E	R	C	I	H	C	K	R	C	V	R	Y	F	E	E	V	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T									S					S											S	S	S	S	S					S															T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		K	S	W	T	V	M	R	F	S	E	T	E	Q	N	G	K	L	E	W	L	I	R	K	D	G	C	M	H	C	E	D	P	G	C	L	K	A	C	P	S	A	G	A	I	I	Q	.	.	Y	A	N	G	I	V	D	F	Q	S	E	N	C	I	G	C	G	Y	C	I	A	G	C	P	F	N	I	P	R	L	N	K
Query Conservation																																																.	.
Alig confidence		.	.																														.	.														.	.																									.	.	.
Template Conservation		.	.																														.	.																																								.	.	.
Template Sequence		.	.	D	E	V	L	D	F	I	E	R	G	V	H	T	F	I	G	T	M	D	F	G	L	P	S	G	F	S	G	N	.	.	I	T	D	I	C	P	V	G	A	L	L	D	L	T	A	R	F	R	A	R	N	W	E	M	E	E	T	P	T	T	C	A	L	C	P	V	G	C	G	.	.	.	I	T	A	D	T
Template Known Secondary structure		.	.							B	S		G	G	G		B				S	S	T	T			S	S			T		.	.						S	S	S	S	S	B		G	G	G	S	S	S			T	T	T	S									S	S	T	T				.	.	.
Template Predicted Secondary structure		.	.																														.	.																																								.	.	.
Template SS confidence
				197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.
		153	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	N	R	V	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	G	E	L	L	R
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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