|   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|  |  | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
C | M | H | C | E | D | P | G | C | L | K | A | C | P | S | A | G | A | I | I | Q | Y | A | N | G | I | V | D | F | Q | S | E | . |
. |
. |
. |
. |
. |
. |
. |
N | C | I | G | C | G | Y | C | I | A | G | C | P | F | N | I | P | R | L | N | K | E | D | N | R | V | Y | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|   |   | . | . | . | . | . | . | . | . |   |
|
|
|
|   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|   |
|   |   | . | . |
|   |   |   |
|
|   |   | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
|
Template Sequence |   |
N | M | T | C | H | F | . |
. |
C | I | V | G | C | G | Y | H | . |
V | Y | K | W | P | E | L | E | E | G | G | R | A | P | E | Q | N | A | L | G | L | D | F | R | K | Q | L | P | P | L | A | S | T | L | T | P | A | M | T | N | V | V | T | E | H | D | G | A | R | Y | D | I | M | V | V | P | D | K | A | C | V | V | N |
Template Known Secondary structure |   |
 |  |  |
| S | S | . | . | B | T | T |
|
|  |  |  | . |  |  |  |  |  | T | T |
|
|
|
| S | S | G | G | G | S | T | T |
|
|
|
| S | S |
|
|
| T | T | S |
|
|
|
| G | G | G |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |
| T | T |
| T | T | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
| . | . |
|
|
|
|
|
|
|  | . |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | |
|
. | . | . | . | . | . | 30 | . | |
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
  |
  |   |
|
|
|
|
160 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . |
Predicted Secondary structure |   |
. | . | . | . |
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
C | T | L | C | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | R | V | S | V | G | Q | E | P | A | C | V | K | T | C | P | T | G | A | I | H | F | G | T | K | K | E | M | L | E | L | A | E | Q | R | V | A | K | L | K | A | R | G | Y | E | H | A | G | V | Y | N | P | E | G | V | G | G |
Query Conservation |   |
. | . | . | . |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |
|   |   |
|
|
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |
|
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|
|
|   |   |
|
|   |
|   | . | . | . | . | . | . |
|
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
S | G | L | S | S | T | R | G | G | K | M | A | S | Y | M | Y | T | P | T | G | D | G | K | E | R | L | S | A | P | R | L | Y | A | . |
. |
. |
. |
. |
. |
A | D | E | W | V | D | T | T | W | D | H | A | M | A | L | Y | A | G | L | I | K | K | T | L | D | S | D | G | P | Q | G | V | F | F | S | C | F | D | H | G | G |
Template Known Secondary structure |   |
T | T |
|
|
| T | T | G | G | G | T | G | G | G | S |
|
| S | S | S | T | T | T | T |
|
|
| S |
|  |  |  |  | . | . | . | . | . | . | T | T |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| G | G | G |  |  |  |  |  |
|
|
|
| S |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
  |
  |   |
222 | . | . |
Predicted Secondary structure |   |
|  |  |
Query SS confidence |   |
|
|
|
Query Sequence |   |
T | H | V |
Query Conservation |   |
|   |   |
Alig confidence |   |
|
|
|
Template Conservation |   |
  |   |   |
Template Sequence |   |
A | G | G |
Template Known Secondary structure |   |
T | T |
|
Template Predicted Secondary structure |   |
|
|
|
Template SS confidence |   |
|
|
|
  |   |
169 | 170 | . |
  |