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Job DescriptionP16256
Confidence99.42%DateThu Jan 5 11:35:02 GMT 2012
Rank5Aligned Residues395
% Identity11%Templatec3lrcC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1)
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.........120
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Query Sequence  RSMGGIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILARRYNAVTLNDMLFARYQS
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Template Sequence  HKVGLIPVTLMVSGNIMGS. GVFLLPANLASTGGIAIYGWLVTIIG. . . . ALGLSMVYAKMSFLDPSPGGSYAYARRCFG
Template Known Secondary structure  SS

TTSSS.STTTTTSS



S....TT


SS
TTTGGGGTT
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   8.10.........20...... ...30.........40.........50.. .......60.........70.........80..
 
   121........130.........140.........150..... ....160.........170.........180.........190......
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Query Sequence  RLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAG. . . . IPYETGLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGT
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Template Conservation              
                                                                  
Template Sequence  PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI
Template Known Secondary structure  TTTTTGGGSSSS



SSSS
S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   197..200.........210.........220.........230.........240.........250.........260...... ...270.....
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Query Sequence  VVLLIGVVHAAGGLSNAVQTLQTIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDS. KAVHRGIII
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Template Conservation      
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Template Sequence  VGIAVFGWFWF. . . . . . . . . . . . RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG
Template Known Secondary structure  S
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SS
S
SSS
TSTT
TTGGGGGGSSS
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   163......170... ......180.........190.........200.........210.........220.........230
 
   276...280.........290.........300.........310.........320.........330.........340...... ...350..
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Query Sequence  GTIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMSTINAQLLQSSAT. . . IIKDLY
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Template Conservation          
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Template Sequence  GVLIAAVCYVLSTTAIMG. . . . . . . . . . . . . . . . . . . . . MIPNTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL
Template Known Secondary structure  TT


S.....................




TTTTSSTTTSS
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   231........240........ .250.........260.........270.........280.........
 
   353......360.........370.........380.........390.........400.........410......... 420.......
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Query Sequence  LNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWER. . . . . ANAKGALS
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Template Conservation 

                                         
                                    
Template Sequence  FPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLA
Template Known Secondary structure  S







SSSS
TTSSS
SSSSS

SSTTTTT
TT
SSS
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   428.430.........440.........450.........460.........470...
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Query Sequence  AMIVGGVLYAVLATLNIQYLGFHPIVPSLLLSLLAFLVGNRFGTSV
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Template Conservation     
                     
              
  
 
Template Sequence  VTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP
Template Known Secondary structure  SS
TTTS




SS

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   390.........400.........410.........420.........430.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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