Job Description P16256 Confidence 99.42% Date Thu Jan 5 11:35:02 GMT 2012 Rank 5 Aligned Residues 395 % Identity 11% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	M	G	G	I	V	L	A	M	T	L	T	A	T	Y	I	S	A	S	S	F	I	G	G	P	G	A	A	Y	K	Y	G	L	G	W	V	L	L	A	M	I	Q	L	P	A	V	W	L	S	L	G	I	L	G	K	K	F	A	I	L	A	R	R	Y	N	A	V	T	L	N	D	M	L	F	A	R	Y	Q	S
Query Conservation
Alig confidence																					.																											.	.	.	.
Template Conservation																					.																											.	.	.	.
Template Sequence		H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	.	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	A	I	Y	G	W	L	V	T	I	I	G	.	.	.	.	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G
Template Known Secondary structure		S	S													T	T	S	S	S	.	S	T	T	T					T	T	S	S					S										.	.	.	.													T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																					.																											.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		R	L	L	V	W	L	A	S	L	S	L	L	V	A	F	V	G	A	M	T	V	Q	F	I	G	G	A	R	L	L	E	T	A	A	G	.	.	.	.	I	P	Y	E	T	G	L	L	I	F	G	I	S	I	A	L	Y	T	A	F	G	G	F	R	A	S	V	L	N	D	T	M	Q	G	L	V	M	L	I	G	T
Query Conservation																																					.	.	.	.
Alig confidence																																					.	.	.	.
Template Conservation
Template Sequence		P	F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I
Template Known Secondary structure														T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		V	V	L	L	I	G	V	V	H	A	A	G	G	L	S	N	A	V	Q	T	L	Q	T	I	D	P	Q	L	V	T	P	Q	G	A	D	D	I	L	S	P	A	F	M	T	S	F	W	V	L	V	C	F	G	V	I	G	L	P	H	T	A	V	R	C	I	S	Y	K	D	S	.	K	A	V	H	R	G	I	I	I
Query Conservation																																																																								.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																																																.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	I	A	V	F	G	W	F	W	F	.	.	.	.	.	.	.	.	.	.	.	.	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G
Template Known Secondary structure											S		.	.	.	.	.	.	.	.	.	.	.	.		S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.													.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		G	T	I	V	V	A	I	L	M	F	G	M	H	L	A	G	A	L	G	R	A	V	I	P	D	L	T	V	P	D	L	V	I	P	T	L	M	V	K	V	L	P	P	F	A	A	G	I	F	L	A	A	P	M	A	A	I	M	S	T	I	N	A	Q	L	L	Q	S	S	A	T	.	.	.	I	I	K	D	L	Y
Query Conservation																																																																									.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L
Template Known Secondary structure														T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T																T	T	S	S	T	T	T	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.						420	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		L	N	I	R	P	D	Q	M	Q	N	E	T	R	L	K	R	M	S	A	V	I	T	L	V	L	G	A	L	L	L	L	A	A	W	K	P	P	E	M	I	I	W	L	N	L	L	A	F	G	G	L	E	A	V	F	L	W	P	L	V	L	G	L	Y	W	E	R	.	.	.	.	.	A	N	A	K	G	A	L	S
Query Conservation																																																																					.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.
Template Conservation
Template Sequence		F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A
Template Known Secondary structure		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	I	V	G	G	V	L	Y	A	V	L	A	T	L	N	I	Q	Y	L	G	F	H	P	I	V	P	S	L	L	L	S	L	L	A	F	L	V	G	N	R	F	G	T	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	T	I	A	F	L	Y	C	I	W	A	V	V	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H	K	N	P
Template Known Secondary structure																S	S																		T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.