Job Description P16256 Confidence 99.23% Date Thu Jan 5 11:35:02 GMT 2012 Rank 6 Aligned Residues 396 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																															.											.	.	.	.	.	.	.	.
Query SS confidence																																																															.											.	.	.	.	.	.	.	.
Query Sequence		L	E	V	I	L	P	L	V	A	Y	L	V	V	V	F	G	I	S	V	Y	A	M	R	K	R	S	T	G	T	F	L	N	E	Y	F	L	G	S	R	S	M	G	G	I	V	L	A	M	T	L	T	A	T	Y	I	S	A	S	S	F	I	.	G	G	P	G	A	A	Y	K	Y	G	.	.	.	.	.	.	.	.
Query Conservation																																																															.											.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																					.											.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	.	.	.	.	.	.	.	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E
Template Known Secondary structure																			S	G	G	G	G			S	S	S	T	T				S	S	.	.	.	.	.	.	.																																T			T	T	S		S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
										74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.	.	.	.	.	.	.	.																																							.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																							.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	G	W	V	L	L	A	M	I	Q	L	P	A	V	W	L	S	L	G	I	L	G	K	K	F	A	I	L	A	R	R	Y	N	A	V	T	L	N	.	.	.	.	.	D	M	L	F	A	R	Y	Q	S	R	L	L	V	W	L	A	S	L	S	L	L	V	A	F	V	G	A	M	T
Query Conservation		.	.	.	.	.	.	.	.																																							.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation
Template Sequence		H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G
Template Known Secondary structure		S														S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		V	Q	F	I	G	G	A	R	L	L	E	T	A	A	G	I	P	Y	E	T	G	L	L	I	F	G	I	S	I	A	L	Y	T	A	F	G	.	.	.	.	.	.	.	G	F	R	A	S	V	L	N	D	T	M	Q	G	L	V	M	L	I	G	T	V	V	L	L	I	G	V	V	H	A	A	G	G	L	S	N	A
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I
Template Known Secondary structure												T	T	T	S																			T	T	G	G	G	T	T	S			S																								S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	L	Q	T	I	D	P	Q	L	V	T	P	Q	G	A	D	D	I	L	S	P	A	F	M	T	S	F	W	V	L	V	C	F	G	V	I	G	L	P	H	T	A	V	R	C	I	S	Y	K	D	S	K	A	V	H	R	G	I	I	I	G	T	I	V	V	A	I	L	M	F	G	M	H	L	A	G	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G
Template Known Secondary structure													T			T	T	T	T	S	S								T	T										T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		294	.	.	.	.									.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																		.
Query SS confidence							.	.	.	.	.	.	.	.																		.
Query Sequence		G	R	A	V	I	.	.	.	.	.	.	.	.	P	D	L	T	V	P	D	L	V	I	P	T	L	M	V	K	V	.	L	P	P	F	A	A	G	I	F	L	A	A	P	M	A	A	I	M	S	T	I	N	A	Q	L	L	Q	S	S	A	T	I	I	K	D	L	Y	L	N	I	R	P	D	Q	M	Q	N	E	T
Query Conservation							.	.	.	.	.	.	.	.																		.
Alig confidence							.	.	.	.	.	.	.	.																		.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	.	.	Q	L	E
Template Known Secondary structure											T						T	T		S										T	S	T	T																															T	T	T	T	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.												.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	K	R	M	S	A	V	I	T	L	V	L	G	A	L	L	L	L	A	A	W	K	P	P	E	M	I	I	W	L	N	L	L	A	F	G	G	L	E	A	V	F	L	W	P	L	V	L	G	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F
Template Known Secondary structure																										G	G	G
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.