Job Description P32704 Confidence 0.88% Date Thu Jan 5 11:50:25 GMT 2012 Rank 71 Aligned Residues 250 % Identity 10% Template c3g06A_ PDB info PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase Resolution 1.90 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	R	K	I	H	K	Y	F	I	D	I	A	S	H	A	N	N	K	C	D	D	R	I	T	R	R	V	Y	L	N	K	D	K	E	V	S	I	K	V	V	Y	F	I	N	N	V	T	V	H	N	N	T	I	E	I	P	Q	T	V	N	G	G	Y	D	F	S	H	L	S	L	K	G	I	V	I	K	D	E	D
Query Conservation
Alig confidence																		.	.	.													.	.	.							.	.
Template Conservation																		.	.	.													.	.	.							.	.
Template Sequence		A	E	E	S	R	G	R	A	A	V	V	Q	K	M	R	A	.	.	.	C	L	N	N	G	N	A	V	L	N	V	G	.	.	.	E	S	G	L	T	T	.	.	L	P	D	C	L	P	A	H	I	T	T	L	V	I	P	D	N	N	L	T	S	L	P	A	L	P	P	E	L	R	T	L	E	V	S	G	N	Q
Template Known Secondary structure		G	G	G														.	.	.													.	.	.	S	S			S		.	.			S				T	T		S						S				S							T	T								S
Template Predicted Secondary structure																		.	.	.													.	.	.							.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N	S	N	F	A	G	C	R	L	Q	N	A	I	F	Q	D	C	N	M	Y	K	T	N	F	N	F	A	I	M	E	K	I	L	F	D	N	C	I	L	D	D	S	N	F	A	Q	I	K	M	T	D	G	T	L	N	S	C	S	A	M	H	V	Q	F	Y	N	A	T	M	N	R	A	N	I	K	N	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	S	L	P	V	L	P	P	G	L	L	E	L	S	I	F	S	N	P	L	T	H	L	P	A	L	P	S	G	L	C	K	L	W	I	F	G	N	Q	L	T	S	L	P	V	L	P	P	G	L	Q	E	L	S	V	S	D	N	Q	L	A	S	L	P	A	L	P	S	E	L	C	K	L	W	A	Y	N	N	Q
Template Known Secondary structure			S							T	T								S											T	T								S	S			S							T	T								S	S			S							T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		L	D	Y	S	N	F	Y	M	A	Y	M	A	E	V	N	L	Y	K	V	I	A	P	Y	I	.	.	.	.	.	N	L	F	R	A	D	L	S	F	S	K	L	D	L	I	N	F	E	H	A	D	L	S	R	V	N	L	N	K	A	T	L	Q	N	I	N	L	I	D	S	K	L	F	F	T	R	L	T	N	T	F
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.
Template Conservation
Template Sequence		L	T	S	L	P	M	L	P	S	G	L	Q	E	L	S	V	S	D	N	Q	L	A	S	L	P	T	L	P	S	E	L	Y	K	L	W	A	Y	N	N	R	L	T	S	L	P	A	L	P	S	G	L	K	E	L	I	V	S	G	N	R	L	T	S	L	P	V	L	P	S	E	L	K	E	L	M	V	S	G	N	R
Template Known Secondary structure			S							T	T								S	S			S							T	T								S	S			S	S						T	T								S	S			S							T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	M	V	I	C	T	D	S	N	M	A	N	V	N	F	N	N	A	N	L	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	S	L	P	M	L	P	S	G	L	L	S	L	S	V	Y	R	N	Q	L	T	R
Template Known Secondary structure			S							T	T								S	S				S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions