Job Description P32704 Confidence 99.80% Date Thu Jan 5 11:50:25 GMT 2012 Rank 14 Aligned Residues 208 % Identity 14% Template c2qzaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	S	L	K	G	I	V	I	K	D	E	D	L	S	N	S	N	F	A	G	C	R	L	Q	N	.	A	I	F	Q	D	C	N	M	Y	K	T	N	F	N	F	A	I	M	E	K	I	L	F	D	N	C	I	L	D	D	S	N	F	A	Q	I	K	M	T	D	G	T	L	N	S	C	S	A	M	H	V	Q	F	Y
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		L	T	A	A	D	R	D	F	S	N	A	D	F	R	N	I	T	F	S	K	I	L	P	P	S	F	X	E	R	D	G	D	I	I	K	G	F	N	F	S	N	S	K	F	T	Y	S	D	I	S	H	L	H	F	D	E	C	R	F	T	Y	S	T	L	S	D	V	V	C	S	N	T	K	F	S	N	S	D	X	N
Template Known Secondary structure				T	G	G	G	B		T	T		B		T	T		B	G	G	G	S	S		G	G	G	G	S	S	S						S		B			S		B		S	S		B		T	T					S		B		T	T		B		T	T		B		T	T					S		B
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	T	M	N	R	A	N	I	K	N	T	F	L	D	Y	S	N	F	Y	M	A	Y	M	A	E	V	N	L	Y	K	V	I	A	P	Y	I	N	L	F	R	A	D	L	S	F	S	K	L	D	L	I	N	F	E	H	A	D	L	S	R	V	N	L	N	K	A	T	L	Q	N	I	N	L	I	D	S	K	L	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	F	L	Q	Y	S	I	T	T	Q	Q	Q	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	D	T	T	L	K	N	T	L	I	R
Template Known Secondary structure		S							T	T			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																																																						.	.	.	.	.	290	.	.	.	.	.	.
			311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	T	R	L	T	N	T	F	L	E	M	V	I	C	T	D	S	N	M	A	N	V	N	F	N	N	A	N	L	S	N	C	H	F	N	C	S	V	L	T	K	A	W	M	F	N	I	R	L	Y	R	V	N	F	D	E	A	S	V	Q	G	M	G	I	T	I	L	R	G	E	E	N	I	S	I	N	S	D	I
Query Conservation		.
Alig confidence		.																																																												.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.
Template Sequence		H	K	A	N	L	S	G	V	I	L	N	E	P	D	N	S	S	P	P	S	V	S	G	G	G	N	F	I	R	L	G	D	I	W	L	Q	X	P	L	L	W	T	E	N	A	V	D	G	F	L	N	H	E	H	N	N	G	K	S	I	.	.	.	.	.	.	.	.	.	L	X	T	I	D	S	L	P	D	K	Y
Template Known Secondary structure		S																					S	S		S						T	T							S	S												G	G	G	T	T	T		S		.	.	.	.	.	.	.	.	.						S	S		T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.										.	.	.	360	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	T	L	Q	K	F	F	E	E	D	C	A	T	H	T	G	M	S	Q	T	E	D	N	L	H	A	V	A	M	K	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	E	K	V	Q	A	X	E	D	L	V	K	S	L	R	G	G	R	L	T	E	A	C	I	R	P	V	E	S	S	L
Template Known Secondary structure		T	T															S	S				T	T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions