Job Description P52143 Confidence 96.85% Date Wed Jan 25 15:20:58 GMT 2012 Rank 33 Aligned Residues 162 % Identity 14% Template d2vdfa1 SCOP info Transmembrane beta-barrels OMPT-like Outer membrane adhesin/invasin OpcA Resolution 1.95

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1267	.	.	1270	.	.	.	.	.	.	.	.	.																			1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.		.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		G	A	T	Y	N	T	R	N	N	V	T	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	G	F	E	Q	T	L	T	G	M	T	V	G	I	D	S	R	N	D	I	P	E	G	.	I	T	T	L	G	A	F	M	G	Y	S	H	S	H	I	G	F	D	R	G	G	H	G
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		I	R	L	E	A	G	F	G	R	S	K	K	N	I	I	N	L	E	T	D	E	N	K	L	G	K	T	K	N	V	K	L	P	T	G	V	P	E	N	R	I	D	L	Y	T	G	Y	T	Y	T	Q	T	L	S	D	S	L	N	F	R	V	G	A	G	L	G	F	E	S	S	K	D	S	I	L	H	S	S	R	Q
Template Known Secondary structure																									T	S	S									S																				T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		1328	.	1330	.	.		.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		S	V	G	S	Y	.	S	L	G	G	Y	A	S	W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F
Query Conservation							.
Alig confidence				.	.		.																									.	.	.																																	.									.	.	.	.	.	.
Template Conservation				.	.																											.	.	.																																	.									.	.	.	.	.	.
Template Sequence		S	W	.	.	L	A	K	V	H	A	D	L	L	S	Q	L	G	N	G	W	Y	I	N	P	W	S	E	V	K	F	.	.	.	D	L	N	S	R	Y	K	L	N	T	D	I	N	Q	K	T	N	G	W	G	F	G	L	G	A	N	I	G	K	K	L	G	.	A	S	I	E	A	G	P	F	.	.	.	.	.	.
Template Known Secondary structure				.	.														T	T												.	.	.																																	.									.	.	.	.	.	.
Template Predicted Secondary structure				.	.																											.	.	.																																	.									.	.	.	.	.	.
Template SS confidence
		136	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.
		1407	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	N	P	E	Y	H	L	S	N	G	M	K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Y	K	Q	R	T	Y	K	E	S	G	E	F	S	V	S	L	T	I	P	K	T	S	I	R	E	Y	G	L	R	V	G	I	K	F
Template Known Secondary structure		.												B				B
Template Predicted Secondary structure		.
Template SS confidence
			213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions