Job Description P52143 Confidence 25.38% Date Wed Jan 25 15:20:58 GMT 2012 Rank 61 Aligned Residues 173 % Identity 10% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	Y	S	L	G	G	Y	A	S	W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D
Query Conservation
Alig confidence																	.																														.	.	.
Template Conservation																	.																														.	.	.
Template Sequence		K	S	K	Q	W	E	G	A	F	E	G	L	T	A	G	.	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	.	.	.	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R	N	A
Template Known Secondary structure															T	T	.																				T	T	T	T							.	.	.																T	T															T
Template Predicted Secondary structure																	.																														.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	E	Y	H	L	S	N	G	M	K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		I	T	D	T	P	L	L	R	.	.	.	.	.	.	.	.	.	.	.	.	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	Y	D	.	.	.	.	.	.	.	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A
Template Known Secondary structure		T	T			B		T	T	.	.	.	.	.	.	.	.	.	.	.	.			S												T	T	.	.	.	.	.	.	.																			S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.													.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.								.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	S	F	S	S	T	L	S	G	H	L	G	V	G	Y	S	H	S	A	G	V	E	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	.	N	L	F	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure						S	S	S	S									.	S	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions