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Job DescriptionP52143
Confidence100.00%DateWed Jan 25 15:20:58 GMT 2012
Rank4Aligned Residues272
% Identity17%Templated1uynx_
SCOP infoTransmembrane beta-barrels Autotransporter Autotransporter
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1234.....1240.........1250.........1260.........1270.........1280.........1290.........1300.........1310...
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Query Sequence  MAATLPLVFDAELNSIRERLNIMKASPHNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMG
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Template Sequence  YADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGG. VEGKMRGSTQTVGIAAKTGEN. . . TTAAATLG
Template Known Secondary structure  TTTS

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   790.........800.........810.........820.........830...... ...840.........850....... ..860.....
 
   1314.....1320.........1330.........1340.........1350.........1360.........1370.........1380.........1390...
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Query Sequence  YSHSHIGFDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGLGGHIETGMRFTDG
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Template Sequence  MGRSTWSEN. SANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNV. . P
Template Known Secondary structure  T.TTTT
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   866...870.... .....880.........890.........900.........910.........920.........930.........940. .
 
   1394.....1400.........1410........ .1420.........1430.........1440.........1450.........1460.........1470
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Query Sequence  NWNLTPYASLTGFTADNPEYHLSNG. . . MKSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVN
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Template Sequence  TGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQP. . . . LSDKAVLFATAGVERDLNGRD. . . . .
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   946...950.........960.........970.........980.........990..... ....1000.........1010......
 
   1471........1480.........1490.........1500.........1510.........1520......
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Query Sequence  SDGNFVNYLSGRRGIYQAGIKASFSSTLSGHLGVGYSHSAGVESPWNAVAGVNWSF
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Template Sequence  . . . . YTVTGPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYG. NHSGRVGVGYRF
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   1017..1020.........1030.........1040.........1050..... ....1060.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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