Job Description P52143 Confidence 96.64% Date Wed Jan 25 15:20:58 GMT 2012 Rank 36 Aligned Residues 193 % Identity 13% Template d1i78a_ SCOP info Transmembrane beta-barrels OMPT-like Outer membrane protease OMPT Resolution 2.60

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		1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.			.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.												.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.		.	.
Predicted Secondary structure																					.	.																				.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																					.	.																				.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		G	S	Y	S	L	G	G	Y	A	S	W	E	H	E	S	G	F	Y	L	.	.	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	.	.	.	.	.	.	.	.	.	.	.	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	.	N	W
Query Conservation																					.	.																				.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																					.	.																				.	.	.	.	.	.	.	.	.	.	.										.																	.
Template Conservation																																																														.
Template Sequence		N	A	A	I	I	K	G	A	I	N	W	D	L	M	P	Q	I	S	I	G	A	A	G	W	T	T	L	G	S	R	G	G	N	M	V	D	Q	D	W	M	D	S	S	N	P	G	T	W	T	D	E	A	R	H	P	D	T	Q	L	N	.	Y	A	N	E	F	D	L	N	I	K	G	W	L	L	N	E	P	N	Y
Template Known Secondary structure															S	S	S											S	S														T	T	S	T	T	S		S												.																	S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		1396	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.							.	.	.	.												.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	.	.	.	.	.	.	E	Y	H	L	.	.	.	.	.	.	.	.	.	.	.	S	N	G	M	K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R
Query Conservation																		.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		R	L	G	L	M	A	G	Y	Q	E	S	R	Y	S	F	T	A	R	G	G	S	Y	I	Y	S	S	E	E	G	F	R	D	D	I	G	S	F	P	N	G	E	R	A	I	G	Y	K	Q	R	F	K	M	P	Y	I	G	L	T	G	S	Y	R	Y	.	.	.	E	D	F	E	L	G	G	T	F	K	Y	S	G	W
Template Known Secondary structure																									B			T	T		S	S		B			B			T	T		S																						.	.	.	T	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.
		1459	1460	.	.	.	.	.	.	.	.	.	1470	.		.	.	.	.	.	.	.	.	1480	.	.	.	.	.		.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.
Predicted Secondary structure															.															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	F	V	D	D	N	R	V	K	V	N	S	.	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	.	Y	Q	A	G	I	K	A	S	F	S	S	T	L	S	G	H	L	G	V	G	Y	S	H	S	A	G	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	S	S	D	N	D	E	H	Y	D	P	K	G	R	I	T	Y	R	S	K	V	K	D	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	V	T	P	N	A	K	V	Y	V	E	G	A	W	N	R	V	T	N	K	K	G	N	T	S	L	Y	D	H	N	N	N	T	S	D	Y	S	K	N	G	A	G	I	E
Template Known Secondary structure													S	S	S																										T	T																								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
			1514	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		N	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions