Job Description P52143 Confidence 99.20% Date Wed Jan 25 15:20:58 GMT 2012 Rank 13 Aligned Residues 160 % Identity 16% Template d1g90a_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1343	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M	K	S	K
Query Conservation
Alig confidence																											.	.	.	.	.	.																		.								.	.																			.	.	.	.
Template Conservation																											.	.	.	.	.	.																		.								.	.																			.	.	.	.
Template Sequence		D	N	T	W	Y	T	G	A	K	L	G	F	S	Q	Y	H	D	T	G	F	I	N	N	N	G	.	.	.	.	.	.	P	T	H	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	N	P	Y	V	G	F	E	.	.	M	G	Y	D	F	L	G	R	M	P	Y	K	G	S	V	E	N	G	.	.	.	.
Template Known Secondary structure																		S	S	S			B	S	S		.	.	.	.	.	.				S	S													.	T	T	T					.	.								S		T	T		S	S				S	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.																		.								.	.																			.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		1423	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	T	L	S	G	H	L
Query Conservation
Alig confidence		.	.																		.	.	.	.															.	.	.	.	.
Template Conservation		.	.																		.	.	.	.															.	.	.	.	.
Template Sequence		.	.	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	.	.	.	.	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	.	.	.	.	.	F	R	A	D	T	K	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L
Template Known Secondary structure		.	.																	S	.	.	.	.	S	S	S												.	.	.	.	.							S	B	T	T	B																					T	T
Template Predicted Secondary structure		.	.																		.	.	.	.															.	.	.	.	.
Template SS confidence
				71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		1503	.	.	.	.	.	.	1510	.	.	.								.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence		G	V	G	Y	S	H	S	A	G	V	E	.	.	.	.	.	.	.	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	Q	F	T	N	N	I	G	D	A	H	T	I	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure												B	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions