Job Description P52143 Confidence 27.62% Date Wed Jan 25 15:20:58 GMT 2012 Rank 60 Aligned Residues 245 % Identity 11% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		1265	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.						.	.	.	1330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		V	W	G	A	T	Y	N	T	R	N	N	V	T	T	D	A	G	A	G	F	E	Q	T	L	T	G	M	T	V	G	I	D	S	R	N	D	I	P	E	G	I	T	T	L	G	A	F	M	G	Y	S	H	S	H	I	G	F	D	R	G	G	H	.	.	.	.	.	G	S	V	G	S	Y	S	L	G	G	Y	A	S
Query Conservation																																																																.	.	.	.	.
Alig confidence																																																																.	.	.	.	.
Template Conservation
Template Sequence		L	G	G	R	Y	D	W	A	D	Q	E	S	L	N	R	V	A	G	T	T	D	K	R	D	D	K	Q	F	T	W	R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V
Template Known Secondary structure																T	T	T																						T	T	S																	B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M
Query Conservation
Alig confidence							.																																																	.	.	.
Template Conservation							.																																																	.	.	.
Template Sequence		P	E	D	R	P	.	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	.	.	.	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N
Template Known Secondary structure			S	S	S		.																				S	S			S																					S	S	S	S	.	.	.																		T	T	T	T	T
Template Predicted Secondary structure							.																																																	.	.	.
Template SS confidence
		529	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.				.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence										.	.	.	.																																				.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation										.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence		T	P	A	Q	V	P	K	H	.	.	.	.	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	.	.	.	.	.	.	.	.	.	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M
Template Known Secondary structure				T	T			S		.	.	.	.												S	S	T	T	T	T															S	S	T	T	.	.	.	.	.	.	.	.	.			S																T	T	T	T	T
Template Predicted Secondary structure										.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		605	.	.	.	.	610	.	.					.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.										.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
			1497	.	.	1500	.	.	.	.	.													.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure		.										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	T	L	S	G	H	L	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	H	S	A	G	V	E	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation		.										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure		T	T									S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions