Job Description P52143 Confidence 99.11% Date Wed Jan 25 15:20:58 GMT 2012 Rank 15 Aligned Residues 641 % Identity 12% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	V	Q	D	G	G	E	A	K	H	V	E	Q	Q	S	G	G	A	L	I	A	S	T	T	S	G	T	L	I	E	G	T	N	S	Y	G	D	A	F	Y	I	R	N	S	E	A	K	N	V	V	L	E	N	A	G	S	L	T	V	V	T	G	S	R	A	V	D	T	I	I	N	A	N	G	K	M	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	S	G	N	D	N	G	Q	G	S	I	T	Q	K	S	G	I	P	S	E	I	K	I	T	L	A	N	M	S	L	P	L	K	E	K	D	K	V	H	N	P	R	Y	D	G	P	N	I	Y	S	P	R	L	N	N	G	E	T	L	Y	F	M	D	Q	K	Q	G	S	L	I	F	A	S	D	I	N	Q	G	A
Template Known Secondary structure							T									S	S	S	S	S	S									T	T	S		S	S							S	G	G	G		S										T									S	S							S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	K	D	V	G	T	V	L	N	S	A	G	T	Q	T	I	Y	A	S	A	T	S	D	K	A	N	I	K	G	G	K	Q	T	V	Y	G	L	A	T	E	A	N	I	E	S	G	E	Q	I	V	D	G	G	S	T	E	K	T	H	I	N	G	G	T	Q	T	V	Q	N	Y	G	K	A	I	N	T	D	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G	E	N	K	G	S	I	S	V	G	D	G	K	V	I	L	E	Q	Q	A	D	D	Q
Template Known Secondary structure								S							S	S	S		B			S	S						T	T								B			T	T							S	S	S							B	S	B																	B			T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	L	Q	Q	I	M	A	N	G	T	A	E	G	S	I	I	N	G	G	S	Q	V	V	N	E	G	G	L	A	E	N	S	V	L	N	D	G	G	T	L	D	V	R	E	K	G	S	A	T	G	I	Q	Q	S	S	Q	G	A	L	V	A	T	T	R	A	T	R	V	T	G	T	R	A	D	G	V	A	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G	A	M	I	V	N	H	N	T	T	Q	A	A	N	V	T	I	T	G	N	E	S	I
Template Known Secondary structure					B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S					S	T	T								S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	Q	G	A	A	N	N	I	L	L	A	N	G	G	V	L	T	V	E	S	D	T	S	S	D	K	T	Q	V	N	M	G	G	R	E	I	V	K	T	K	A	T	A	T	G	T	T	L	T	G	G	E	Q	I	V	E	G	V	A	N	E	T	T	I	N	D	G	G	I	Q	T	V	S	A	N	G	E	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G	D	I	T	Q	T	K	G	K	L	F	F	S	G	R	P	T	P	H	A	Y	N	H
Template Known Secondary structure		S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S					S	S						S	S														B
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	K	I	N	E	G	G	T	L	T	V	N	D	N	G	K	A	T	D	I	V	Q	N	S	G	A	A	L	Q	T	S	T	A	N	G	I	E	I	S	G	T	H	Q	Y	G	T	F	S	I	S	G	N	L	A	T	N	M	L	L	E	N	G	G	N	L	L	V	L	A	G	T	E	A	R	D	S	T	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A	N	A	T	F	G	V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W	T	G
Template Known Secondary structure											T			S	B					T	T																S	S						S	S												T	T									T	T	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
		927	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	G	A	M	Q	N	L	G	Q	D	S	A	T	K	V	N	S	G	G	Q	Y	T	L	G	R	S	K	D	E	F	Q	A	L	A	R	A	E	D	L	Q	V	A	G	G	T	A	I	V	Y	A	G	T	L	A	D	A	S	V	S	G	A	T	G	S	L	S	L	M	T	P	R	D	N	V	T	P	V	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S	N	N	A	T	Q	I	G	N	I	R	L	S	D	N	S	T	A	T	V	D	N	A
Template Known Secondary structure																			S							S						T	T							S	S					S						T	T							T	T					S						T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
		1007	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	V	R	I	T	D	S	A	T	L	T	L	G	N	G	V	D	T	T	L	A	D	L	T	A	A	S	R	G	S	V	W	L	N	S	N	N	S	C	A	G	T	S	N	C	E	Y	R	V	N	S	L	L	L	N	D	G	D	V	Y	L	S	A	Q	T	A	A	P	A	T	T	N	G	I	Y	N	T	L
Query Conservation
Alig confidence																																					.	.	.																																.	.	.	.	.	.	.
Template Conservation																																					.	.	.																																.	.	.	.	.	.	.
Template Sequence		N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	.	.	.	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	S	T	I	T	L	N	S	A	Y	S	R	.	.	.	.	.	.	.	F	N	T	L
Template Known Secondary structure					S						T	T							S					S						T	T						.	.	.		S							S					S											S		G	G	G			.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820				.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.								.	.	.	.
		1087	.	.	1090		.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.				.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.
Predicted Secondary structure						.																																																										.	.	.
Query SS confidence						.																																																										.	.	.
Query Sequence		T	T	N	E	.	L	S	G	S	G	N	F	Y	L	H	T	N	V	A	G	S	R	G	D	Q	L	V	V	N	N	N	A	T	G	N	F	K	I	F	V	Q	D	T	G	V	S	P	Q	S	D	D	A	M	T	L	V	K	T	G	G	G	D	.	.	.	A	S	F	T	L	G	N	T	G	G	F	V	D	L	G
Query Conservation						.																																																										.	.	.
Alig confidence						.																																																										.	.	.
Template Conservation
Template Sequence		T	V	N	G	K	L	S	G	Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	S	D	K	L	K	F	T	L	E	N	D	H	V	D	A	G
Template Known Secondary structure					S														T	T	T	T									T	T													S				S	S										S	S	S	S				T	T						T	T	S					T
Template Predicted Secondary structure
Template SS confidence
		879	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.
		1163	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	E	Y	V	L	K	S	D	G	N	S	N	W	N	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		A	L	R	Y	K	L	V	K	.	N	D	G	E	F	R	L
Template Known Secondary structure		T								.		T	T
Template Predicted Secondary structure										.
Template SS confidence
		959	960	.	.	.	.	.	.		.	.	.	970	.	.	.