Job Description P52143 Confidence 4.41% Date Wed Jan 25 15:20:58 GMT 2012 Rank 80 Aligned Residues 224 % Identity 15% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

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		1285	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	T	L	T	G	M	T	V	G	I	D	S	R	N	D	I	P	E	G	I	T	T	L	G	A	F	M	G	Y	S	H	S	H	I	G	F	D	R	G	G	H	G	S	V	G	S	Y	S	L	G	G	Y	A	S	W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		D	K	D	R	T	H	V	F	G	D	I	S	T	Q	W	A	P	H	.	.	.	H	R	I	G	V	R	I	H	H	A	D	D	S	D	K	T	Y	T	G	Q	L	T	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T	W	L	T	G	D	R	D	N	L	T	Q
Template Known Secondary structure		T	T	T														T	T	.	.	.																S															S	T	T		T	T		S		S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		1365	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.									1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.																.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.																.	.
Query Sequence		M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M	.	.	.	.	.	.	.	.	K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.									.	.	.	.												.	.	.																							.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.									.	.	.	.												.	.	.
Template Sequence		.	.	.	.	.	.	.	S	G	D	V	N	A	F	G	.	.	.	.	V	D	L	G	L	R	W	N	I	D	E	.	.	.	Q	W	K	A	G	V	G	Y	A	R	G	S	G	G	G	K	D	G	E	E	Q	F	Q	Q	T	G	L	E	S	N	R	S	N	F	T	G	T	R	S	R	V	H	R	F	G	E	A
Template Known Secondary structure		.	.	.	.	.	.	.									.	.	.	.										S	S	.	.	.	S														S	G	G	G	T	T						S	B							T	T	S	S	S	S				T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.									.	.	.	.												.	.	.
Template SS confidence
									304	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
												1435	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	T	L	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																							.																										.	.	.	.	.	.
Template Conservation																																																		.
Template Sequence		F	R	G	E	L	S	N	L	Q	A	A	T	L	F	G	S	W	Q	L	R	E	D	Y	D	A	S	L	V	Y	H	K	F	W	R	V	D	D	D	S	D	I	G	T	S	G	I	N	A	.	A	L	Q	P	G	E	K	D	I	G	Q	E	L	D	L	V	V	T	K	Y	F	K	Q	G	L	L	P	A	S	X	S
Template Known Secondary structure		T				S	S	S													T	T	T													S	S	T	T	S						S				.				T	T																	S	S	S				T	T	S	G
Template Predicted Secondary structure																																																		.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
										1499	1500	.	.	.	.	.	.	.	.	.	1510	.				.	.	.	.				.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.					.	.	.
Query SS confidence		.	.	.	.	.	.	.	.														.	.	.					.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	G	H	L	G	V	G	Y	S	H	S	A	G	.	.	.	V	E	S	P	.	.	.	W	N	A	V	A	G	V	N	W	S	F
Query Conservation		.	.	.	.	.	.	.	.														.	.	.					.	.	.
Alig confidence		.	.	.	.	.	.	.	.														.	.	.					.	.	.
Template Conservation
Template Sequence		Q	Y	V	D	E	P	S	A	L	I	R	F	R	G	G	L	F	K	P	G	D	A	Y	G	P	G	T	D	S	T	X	H	R	A	F	V	D	F	I	W	R	F
Template Known Secondary structure		G	G	G	T		S	S	S													T	T	S		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions