Job Description P52143 Confidence 95.30% Date Wed Jan 25 15:20:58 GMT 2012 Rank 46 Aligned Residues 192 % Identity 14% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1259	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	H	N	N	N	V	W	G	A	T	Y	N	T	R	N	N	V	T	T	D	A	G	A	G	F	E	Q	T	L	T	G	M	T	V	G	I	D	S	R	N	D	I	P	E	G	I	T	T	L	G	A	F	M	G	Y	S	H	S	H	I	G	F	D	R	G	G	H	G	S	V	G	S	Y	S	L	G	G	Y	A
Query Conservation
Alig confidence																																											.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	.	.	.	.	.	.	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A
Template Known Secondary structure		S	S	S		S	S											B		S	S	S		G	G	G		B		S											T	T	.	.	.	.	.	.														S	T	T	S	S	S	S	S			S
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		1339	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G
Query Conservation
Alig confidence								.																																																.	.	.	.	.	.	.	.	.
Template Conservation								.																																																.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	D	A	N	N	.	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	.	.	.	.	.	.	.	.	.	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G
Template Known Secondary structure						T	T	.											S	S							T	T	T							S														T	T	S				.	.	.	.	.	.	.	.	.											S		T	T	T	T	S
Template Predicted Secondary structure								.																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.										270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		1419	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	T	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	D	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.																																																													.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		1499	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.								.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		S	G	H	L	G	V	G	Y	S	H	S	A	G	V	E	.	.	.	.	.	.	.	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure																S	S		T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions