Job Description P52143 Confidence 99.18% Date Wed Jan 25 15:20:58 GMT 2012 Rank 14 Aligned Residues 134 % Identity 14% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		1342	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M	K	S
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.															.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.															.	.	.	.	.	.	.
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	A	F	G	G	Y	Q	V	N	.	P	Y	V	G	F	E	.	.	M	G	Y	D	W	L	G	R	M	P	Y	A	Y	K	.	.	.	.	.	.	.
Template Known Secondary structure			T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	T	T					.	.															.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.															.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																				.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.
		1422	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	T	L	S	G	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	.	.	L	D	I	Y	T	R	L	G	G	M	V	.	.	.	.	.	W	R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R
Template Known Secondary structure		.	.	.	.	.	.	.	.														S	S	S	S	.	.												.	.	.	.	.								S	S	S																						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.
Template SS confidence
										74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		1502	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	G	Y	S	H	S	A	G	V	E	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation
Alig confidence											.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		L	E	Y	Q	W	T	N	G	M	.	.	.	.	.	.	.	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure											.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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