Job Description P52143 Confidence 99.58% Date Wed Jan 25 15:20:58 GMT 2012 Rank 9 Aligned Residues 640 % Identity 17% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	V	Q	D	G	G	E	A	K	H	V	E	Q	Q	S	G	G	A	L	I	A	S	T	T	S	G	T	L	I	E	G	T	N	S	Y	G	D	A	F	Y	I	R	N	S	E	A	K	N	V	V	L	E	N	A	G	S	L	T	V	V	T	G	S	R	A	V	D	T	I	I	N	A	N	G	K	M	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	S	L	T	G	S	N	T	Q	Y	N	W	N	P	T	G	K	T	S	V	I	S	N	G	S	E	S	L	N	V	D	L	F	D	S	S	Q	D	T	D	S	K	K	N	N	H	G	K	S	V	T	L	R	G	S	G	T	L	T	L	N	N	N	I	D	Q	G	A	G	G	L	F	F	E	G	D	Y	E	V
Template Known Secondary structure																		T	T							T	T										T	T	S	S	S							T															S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.									660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.
Query Sequence		Y	G	K	D	V	G	T	V	L	N	S	A	G	T	Q	T	I	Y	A	S	A	T	S	D	K	A	N	I	K	G	G	K	Q	T	V	Y	G	L	A	T	E	A	N	I	E	S	G	E	Q	I	V	D	G	.	.	.	.	.	.	.	.	G	S	T	E	K	T	H	I	N	G	G	T	Q	T	V	Q	N	Y	G
Query Conservation																																																							.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	T	S	D	S	T	T	W	K	G	A	G	V	S	V	A	D	G	K	T	V	T	W	K	V	H	N	P	K	S	D	R	L	A	K	I	G	K	G	T	L	I	V	E	G	K	G	E	N	K	G	S	L	K	V	G	D	G	T	V	I	L	K	Q	Q	A	D	A	N	N	K	V	K	A	F	S	Q	V	G
Template Known Secondary structure				S	S	T	T		B			S	S						T	T								B			T	T							S	S	S							B	S	B									S								B			T	T				B	S		S
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	N	T	D	I	V	S	G	L	Q	Q	I	M	A	N	G	T	A	E	G	S	I	I	N	G	G	S	Q	V	V	N	E	G	G	L	A	E	N	S	V	L	N	D	G	G	T	L	D	V	R	E	K	G	S	A	T	G	I	Q	Q	S	S	Q	G	A	L	V	A	T	T	R	A	T	R	V	T	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	S	G	R	S	T	V	V	L	N	D	D	K	Q	V	D	P	N	S	I	Y	F	G	F	R	G	G	R	L	D	A	N	G	N	N	L	T	F	E	H	I	R	N	I	D	D	G	A	R	L	V	N	H	N	T	S	K	T	S	T	V	T	I	T	G	E	S	L	I	T	D	P	N	T	I	T	P	Y	N
Template Known Secondary structure				S	S							S	S	T	T	S	S		G	G	G					T	T							T	T						S					S	S	T	T								S	S	S															G	G	G
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	G	V	A	F	S	I	E	Q	G	A	A	N	N	I	L	L	A	N	G	G	V	L	T	V	E	S	D	T	S	S	D	K	T	Q	V	N	M	G	G	R	E	I	V	K	T	K	A	T	A	T	G	T	T	L	T	G	G	E	Q	I	V	E	G	V	A	N	E	T	T	I	N	D	G	G	I	Q	T
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		I	D	A	P	D	E	D	N	.	.	P	Y	A	F	R	R	I	K	D	G	G	Q	L	Y	L	N	L	E	N	Y	T	Y	Y	A	L	R	K	G	A	S	T	R	S	E	L	P	K	N	S	G	E	S	N	E	N	W	L	Y	M	G	K	T	S	D	E	A	K	R	N	V	M	N	H	I	N	N	E	R	M	N
Template Known Secondary structure							S	S		.	.	T	T	S						T	T		S	S				T	T	T	T							T	T			T	T	S				S	S	T	T				S	S						S	S																T
Template Predicted Secondary structure										.	.
Template SS confidence
		579	580	.	.	.	.	.	.			.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	N	G	E	A	I	K	T	K	I	N	E	G	G	T	L	T	V	N	D	N	G	K	A	T	D	I	V	Q	N	S	G	A	A	L	Q	T	S	T	A	N	G	I	E	I	S	G	T	H	Q	Y	G	T	F	S	I	S	G	N	L	A	T	N	M	L	L	E	N	G	G	N	L	L	V	L	A	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	N	G	Y	F	G	E	E	E	G	K	N	N	G	N	L	N	V	T	F	K	G	K	S	E	Q	N	R	F	L	L	T	G	G	T	N	L	N	G	D	L	K	V	E	K	G	T	L	F	L	S	G	R	P	T	P	H	A	R	D	I	A	G	I	S	S	T	K	K	D	Q	H	F	A	E	N	N	E	V
Template Known Secondary structure			B		S			S			T	T	S												S	S	T	T							S					S	S							S															T	T	S				S				G	G	G		G	G	G
Template Predicted Secondary structure
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	D	S	T	V	G	K	G	G	A	M	Q	N	L	G	Q	D	S	A	T	K	V	N	S	G	G	Q	Y	T	L	G	R	S	K	D	E	F	Q	A	L	A	R	A	E	D	L	Q	V	A	G	G	T	A	I	V	Y	A	G	T	L	A	D	A	S	V	S	G	A	T	G	S	L	S	L	M	T	P	R
Query Conservation
Alig confidence																																																																.	.	.
Template Conservation																																																																.	.	.
Template Sequence		V	V	E	D	D	W	I	N	R	N	F	K	A	T	N	I	N	V	T	N	N	A	T	L	Y	S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I	G	Y	K	A	G	D	T	V	C	V	R	S	D	Y	T	.	.	.	G	Y	V	T	C	T	T	D	K	L	S	D	K	A	L
Template Known Secondary structure				T	T																T	T							T	T												T	T						S	B		T	T								T	T	T	.	.	.								S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.				.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
		999	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	T	P	V	K	L	E	G	A	V	R	I	T	D	S	A	T	L	T	L	G	N	G	V	D	T	T	L	A	D	L	T	A	A	S	R	G	S	V	W	L	N	S	N	N	S	C	A	G	T	S	N	C	E	Y	R	V	N	S	L	L	L	N	D	G	D	V	Y	L	S	A	Q	T	A	A	P	A	T
Query Conservation
Alig confidence																																											.	.	.	.																																	.	.
Template Conservation																																											.	.	.	.																																	.	.
Template Sequence		N	S	F	N	A	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G	K	A	N	L	F	G	T	I	S	G	T	G	N	S	Q	V	R	L	.	.	.	.	T	E	N	S	H	W	H	L	T	G	D	S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q	N	D	A	.	.	N
Template Known Secondary structure		T	T	S							S						T	T						S	B					S						T	T						.	.	.	.		T	T						S	S																S	S	S				T	.	.	T
Template Predicted Secondary structure																																											.	.	.	.																																	.	.
Template SS confidence
		814	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.					.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.			.
		1079	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	G	I	Y	N	T	L	T	T	N	E	L	S	G	S	G	N	F	Y	L	H	T	N	V	A	G	S	R	G	D	Q	L	V	V	N	N	N	A	T	G	N	F	K	I	F	V	Q	D	T	G	V	S	P	Q	S	D	D	A	M	T	L	V	K	T	G	G	G	D	A	S	F	T	L	G	N	T	G	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	T	T	Y	N	T	L	T	V	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	K	Q	G	D	K	V	V	V	T	K	S	A	T	G	N	F	T	L	Q	V	A	D	K	T	G	E	P	T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	N	N	L	N	V	S	L	V	G	N	T
Template Known Secondary structure		S																								G	G	G	T																						S	S					S									T	T	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		888	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		1159	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	G	T	Y	E	Y	V	L	K	S	D	G	N	S	N	W	N	L
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		V	D	L	G	A	W	K	Y	K	L	R	N	V	.	N	G	R	Y	D	L
Template Known Secondary structure		S	S	G	G	G									.	T	T
Template Predicted Secondary structure															.
Template SS confidence
		968	.	970	.	.	.	.	.	.	.	.	.	980		.	.	.	.	.	.