Job Description P52143 Confidence 48.50% Date Wed Jan 25 15:20:58 GMT 2012 Rank 58 Aligned Residues 220 % Identity 12% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

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		1293	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		V	G	I	D	S	R	N	D	I	P	E	G	I	T	T	L	G	A	F	M	G	Y	S	H	S	H	I	G	F	D	R	G	G	H	G	S	V	G	S	Y	S	L	G	G	Y	A	S	W	E	H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		T	G	I	Q	A	S	S	V	V	G	G	M	A	F	L	S	G	S	V	F	S	E	N	N	N	D	T	D	G	D	.	.	.	.	.	S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R	P	R	M
Template Known Secondary structure											T	T	T														B	T	T	S		.	.	.	.	.																	T	T															T	T	B						B				T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
																				1365	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M	K	S	K	S	V	D	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.																.	.	.	.	.
Template Conservation																																																								.	.	.	.																.	.	.	.	.
Template Sequence		G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S	A	V	E	G	L	W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	G	A	F	S	A	Q	A	E	.	.	.	.	Y	L	R	R	T	V	K	A	E	R	D	R	E	D	L	.	.	.	.	.	K	A
Template Known Secondary structure		T		G	G	G	S		S	S	B				G	G	G	B						B						T	T	S																T	T							.	.	.	.										T	T					.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.																.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.
		1427	.	.	1430	.	.	.	.	.	.	.				.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.									.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.
Predicted Secondary structure													.	.	.																.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																.	.	.	.	.	.	.	.
Query Sequence		R	S	I	Y	R	E	L	G	A	T	L	.	.	.	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	.	.	.	.	.	.	.	.	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S
Query Conservation													.	.	.																.	.	.	.	.	.	.	.
Alig confidence													.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K	E	I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N
Template Known Secondary structure												T	T								T	T	T	T								S		T	T	T																	T	T			S			S	S	B		S	S																S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		1496	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.							.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		S	T	L	S	G	H	L	G	V	G	Y	S	H	S	A	G	.	.	.	.	.	.	V	E	S	P	W	N	A	V	A	G	V	N	W	S	F
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	G	D	D	S	G	D	G	L	V	M	R	L	Q	Y	V	F
Template Known Secondary structure		S	S														S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions