Job Description P52143 Confidence 99.25% Date Wed Jan 25 15:20:58 GMT 2012 Rank 11 Aligned Residues 171 % Identity 13% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1342	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	S	G	F	Y	L	D	G	V	V	K	L	N	R	F	K	S	N	V	A	G	K	M	S	S	G	G	A	A	N	G	S	Y	H	S	N	G	L	G	G	H	I	E	T	G	M	R	F	T	D	G	N	W	N	L	T	P	Y	A	S	L	T	G	F	T	A	D	N	P	E	Y	H	L	S	N	G	M	K	S
Query Conservation
Alig confidence																												.																										.	.	.																							.	.	.
Template Conservation																												.																										.	.	.																							.	.	.
Template Sequence		K	D	N	T	W	Y	A	G	G	K	L	G	W	S	Q	Y	H	D	T	G	F	Y	G	N	G	F	.	Q	N	N	N	G	P	T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	.	.	.	L	G	F	E	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	D	N	G	.	.	.
Template Known Secondary structure															S					S						S		.			S				S																	T	T	.	.	.																		S	S				.	.	.
Template Predicted Secondary structure																												.																										.	.	.																							.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		1422	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	V	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	S	D	G	N	F	V	N	Y	L	S	G	R	R	G	I	Y	Q	A	G	I	K	A	S	F	S	S	T	L	S	G	H
Query Conservation
Alig confidence		.	.	.																			.	.	.	.
Template Conservation		.	.	.																			.	.	.	.
Template Sequence		.	.	.	A	F	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	.	.	.	.	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T	R
Template Known Secondary structure		.	.	.	S	S															S	S	.	.	.	.	S	S																			S				S	S	S																						S	S	S
Template Predicted Secondary structure		.	.	.																			.	.	.	.
Template SS confidence
					88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		1502	.	.	.	.	.	.	.	1510	.	.	.	.	.	.								.	.	.	1520	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		L	G	V	G	Y	S	H	S	A	G	V	E	S	P	W	.	.	.	.	.	.	.	N	A	V	A	G	V	N	W	S	F
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	Y	Q	W	V	N	N	I	G	D	A	G	T	V	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure					S	S		S	S					S					S	S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions