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Job DescriptionP76257
Confidence99.67%DateThu Jan 5 12:21:18 GMT 2012
Rank39Aligned Residues271
% Identity20%Templatec3rc8A_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  KGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA
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Template Sequence  QRKIIFHSGPTNSGKTYHAIQ. KYFSAKSGVYCGPLKLLAHEIF. . . . . . . EKSNAAGVPCDLVTGEERVTVQ. . . . . . .
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SSSSSTT.SSSSS.......TT


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   199200.........210......... 220.........230.........240. ........250.........260...
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PNGKQASHVSC
Template Known Secondary structure  .....................................................................SSS


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   264.....270....
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
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Template Sequence  TVEMC. . . . . . . . . . . . SVTTPYEVAVIDEIQMIRD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGG
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SSS
GGGGG
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   275.... 280.........290........
 
   277..280.........290.........300.........310.........320.........330.........340.........350......
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Query Sequence  QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG
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   357..360.........370.........380.........390.........400.........410.........420.........430......
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Query Sequence  YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCV
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Template Sequence  . . . . . . . . . . . . . . . . . . PARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEE. VEVRDYKRLTP. . . . . ISVL
Template Known Secondary structure  ..................TTT

GGGT

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   299300.........310.........320.........330......... 340.........350 ....
 
   437..440.........450.........460.........470.........480.........490...... ...500....... ..510.
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Query Sequence  LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQG. . . ETSKGQLLQQF. . VSAG
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Template Sequence  DHALESLDN. . . . . . . . . . . . . . . . . LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDP
Template Known Secondary structure  SS


SSTT.................

TT
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TTS

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   355....360... ......370.........380.........390.........400.........410.......
 
   512.......520.........530.........540. ........550.........560.........570.........580.........590
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Query Sequence  NALLVATSSFWEGVDVRGDTLSLVIIDKLP. FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD
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Template Sequence  CKILVATDAIGMGLNLS. . . IRRIIFYSLIKEPI. . . . . . . . . . . . . . . . . . . . . . . . . . . . TTSQALQIAGRAGRFSSR
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GGGGSS



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   418.420.........430.... .....440........ .450.........460......
 
   591........
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Query Sequence  . . RGVLVICDN
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Template Sequence  FKEGEVTTMNH
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SSS
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   478.480........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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