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Job DescriptionP76257
Confidence99.78%DateThu Jan 5 12:21:18 GMT 2012
Rank23Aligned Residues298
% Identity19%Templatec3bxzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.. .......70.........80.......
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Query Sequence  LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA. . . KKKVIISTGSKALQDQLYSRDLPTV
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Template Sequence  SKRVFG. MRHFDVQLLGGMVLN. . . . . . ERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA. ENNRPL
Template Known Secondary structure  T
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TT......TT

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   75....80 .........90..... ....100.........110.........120.........130.........140 ......
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN
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Template Sequence  FEFLGLTVGINLPGMPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT



TT

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   147..150.........160...
 
   168.170.........180.........190.........200.........210..... ....220.........230.........240....
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Query Sequence  CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGEL. . . IPEADVMIFDEAHQLPDIASQYFGQSLSS
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Template Sequence  . . . . . . . . . . . . . . . PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD. . . . . . . . . . . . . . . .
Template Known Secondary structure  ...............SST
SSGGG



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   164.....170.........180.........190.........200.........210..
 
   245....250.........260.........270.........280.........290.........300.........310.........320....
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Query Sequence  RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKL
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   325....330.........340.........350.........360.........370.........380.........390.........400....
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Query Sequence  SLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . SILIDEARTPLIILASITFQN. . . . . . . . . . . . . . . . YFRLYEKLAGMTGTADT. . E
Template Known Secondary structure  .......................TGGGS






GG................GGGGSSS

ST..T
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   213......220.........230... ......240.........250 .
 
   405....410.........420.........430.........440.........450.........460.........470.........480....
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Query Sequence  LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF
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Template Sequence  AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYM. . . . . . . TEAEKIQAIIEDIKERTAKGQ. PVLVGTISIEKSELVSNEL
Template Known Secondary structure  TTS




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   398.400.........410.........420......... 430.........440.........450 .........460.........
 
   485....490........ .500.........510.........520.........
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Query Sequence  RATMTLPVLLQGET. . . SKGQLLQQFVSAGNALLVATSSFWEGVDVRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TKAGIKHNVLNAKFHANEAAIVAQAGYPAA. . VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDA
Template Known Secondary structure  TS




SS
TTTTSSS
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TT

TTT
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   470.........480.........490......... 500.........510.........520.........530.........540.......
 
   530.........540.
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Query Sequence  . . . DTLSLVIIDKLP
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Template Sequence  VLEAGGLHIIGTERH
Template Known Secondary structure  TTS
SS

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   548.550.........560..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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