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Job DescriptionP76257
Confidence99.72%DateThu Jan 5 12:21:18 GMT 2012
Rank32Aligned Residues324
% Identity22%Templatec1hv8B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17. .20.........30.........40.........50.........60 .........70.........80.........90
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Query Sequence  GF. KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL. . . . . RAKKKVIISTGSKALQDQLYSRDLPTVSKA
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Template Sequence  GFEKPTDIQXKVIPLF. . . LNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVA. DEIESLKGN
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   25....30.........40 .........50.........60.........70.........80.........90. ........100
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG
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Template Sequence  K. . NLKIAKIYGGKA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   101 ........110...
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
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Template Sequence  . . . . . . . . . . IYPQIKALKNANIVVGTPGRIL. . . . DHINRGTLNLKNVKYFILDEADEXLNXGFIK. . . . . . . . . . . . .
Template Known Secondary structure  ..........T
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GGG

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   114.....120.........130..... ....140.........150.........160......
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA
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   331........340.........350.........360.........370.........380.........390.........400.........410
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Query Sequence  LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DVEKILNACNKDKRILLFSATXP. . REILNLAK
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   167..170.........180......... 190.......
 
   411........420.........430.........440.........450.........460.........470.........480.........490
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Query Sequence  RLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL
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Template Sequence  KYXGDYSFIKAKINANIEQSYVEV. . . . . . . . . . . . . NENERFEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFK
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STTTS.............
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   198.200.........210.........220. ........230.........240.........250.........260....
 
   491....... .500.........510.........520.........530.........540.........550.........560.......
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Query Sequence  PVLLQGET. . . SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE
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Template Sequence  AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVND. . LNCVINYHLPQ. . . . . . . . . . . . . . . . . . . . . . . . .
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   265....270.........280.........290.........300...... ...310.......
 
   568.570.........580.........590.........600.........610....
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Query Sequence  VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL
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Template Sequence  . . . . . NPESYXHRIGRTGRAGKKGKAISIINRR. . EYKKLRYIERAX
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   318.320.........330.........340..... ....350.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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