Job Description P32141 Confidence 94.01% Date Thu Jan 5 11:49:28 GMT 2012 Rank 198 Aligned Residues 242 % Identity 12% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	N	D	I	T	R	A	S	G	G	F	A	M	L	A	V	D	Q	R	E	A	M	R	M	M	F	A	A	A	G	A	P	A	P	V	A	D	S	V	L	T	D	F	K	V	N	A	A	K	A	L	S	P	Y	A	S	A	I	L	V	D	Q	Q	F	C	Y	R	Q	V	V	E	Q	N	A	I	A	K	S	C
Query Conservation
Alig confidence																					.																					.	.	.	.	.
Template Conservation																					.																					.	.	.	.	.
Template Sequence		S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	.	D	G	L	S	A	R	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	.	.	.	.	.	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A	E	M	I	S	N	I	S	P	S	T
Template Known Secondary structure									S	T	T										.	S									T	T	T		S							.	.	.	.	.								T	S	S		S	S	S																		S	T	T	S
Template Predicted Secondary structure																					.																					.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		A	M	I	V	A	A	D	E	F	I	P	G	N	G	I	P	V	D	S	V	V	I	D	R	K	I	N	P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	L	W	R	S	D	.	.	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	G	L	V	S	I	I	E	P	V	V
Query Conservation																																																		.	.
Alig confidence											.	.	.											.	.	.	.	.																						.	.
Template Conservation											.	.	.											.	.	.	.	.
Template Sequence		P	V	I	A	D	A	D	T	G	.	.	.	Y	G	G	P	I	M	V	A	R	T	.	.	.	.	.	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	S	D	I	V	V	I	A	R	T
Template Known Secondary structure								T	T		.	.	.	S	S	S								.	.	.	.	.							T	T									B						B																					T
Template Predicted Secondary structure											.	.	.											.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	P	R	R	G	D	K	F	D	R	E	Q	A	I	I	D	A	A	K	E	L	G	D	S	G	A	D	L	Y	K	V	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V	A	M
Query Conservation
Alig confidence		.	.	.	.																																		.	.	.	.	.																												.	.	.
Template Conservation		.	.	.	.																																		.	.	.	.	.																												.	.	.
Template Sequence		.	.	.	.	D	S	L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	G	A	D	V	G	F	L	E	G	I	T	S	.	.	.	.	.	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N	M	V	E	H	G	A	T	P	.	.	.	S	I	S	A	A	E	A	K
Template Known Secondary structure		.	.	.	.																						T		S					T	T				.	.	.	.	.											T	T	T	S		B						T	T	S	S	S		.	.	.
Template Predicted Secondary structure		.	.	.	.																																		.	.	.	.	.																												.	.	.
Template SS confidence
						163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	G	A	S	G	F	L	A	G	R	A	V	W	A	S	V	V	G	L	P	D	N	E	L	M	L	R	D	V	C	A	P	K	L	Q	Q	L	G	D	I	V	D	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	M	G	F	R	I	I	I	F	P	F	A	A	L	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	A	A	M	R	E	A	M	E	K	L	K	R
Template Known Secondary structure				T		S					T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.															.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions