Job Description P32141 Confidence 95.75% Date Thu Jan 5 11:49:28 GMT 2012 Rank 156 Aligned Residues 134 % Identity 10% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	L	W	R	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	G	L	V	S	I	I	E	P	V	V	R	P	P	R	R	G	D	K	F	D	R	E	Q	A	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.												.	.	.	.
Template Conservation													.	.																																								.	.	.												.	.	.	.
Template Sequence		A	R	I	G	E	A	F	G	Y	D	E	.	.	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	.	.	.	R	V	P	V	T	V	K	X	R	L	G	.	.	.	.	L	E	G	K	E	T	Y	R	G	L
Template Known Secondary structure								T	T		S		.	.									S							T		G	G	G	G	G	G														T	T		.	.	.	S	S								S		.	.	.	.	B	T	T
Template Predicted Secondary structure													.	.																																								.	.	.												.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.																									.
Query SS confidence																			.	.	.	.	.	.	.	.																									.
Query Sequence		I	D	A	A	K	E	L	G	D	S	G	A	D	L	Y	K	V	.	.	.	.	.	.	.	.	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	.	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V	A	M	T	A	G	A	S	G
Query Conservation																			.	.	.	.	.	.	.	.																									.
Alig confidence																			.	.	.	.	.	.	.	.																									.																					.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	.	.	.	.	K	R	V	D	G
Template Known Secondary structure											T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	.	.	.	.	T	T	S	S
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.
		249	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A	G	R	A	V	W	A	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	X	L	G	R	A	V	Y	E	D	P
Template Known Secondary structure					S							G
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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