Job Description P32141 Confidence 96.85% Date Thu Jan 5 11:49:28 GMT 2012 Rank 108 Aligned Residues 237 % Identity 14% Template c2r8wB_ PDB info PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 Resolution 1.80 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.												.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	R	E	A	M	R	M	M	F	A	A	A	G	A	P	A	P	V	A	D	S	.	V	L	T	D	F	K	V	N	A	A	K	A	L	S	P	Y	A	S	A	I	L	V	.	.	.	.	.	.	.	.	.	.	.	D	Q	Q	F	C	Y	R	Q	V	V	E	Q	N	A	I	A	K	S	C	A	M	I	V	A
Query Conservation																								.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	X	A	T	R	F	K	G	L	S	A	F	P	I	T	P	A	D	E	A	G	R	V	D	I	E	A	F	S	A	L	I	A	R	L	D	A	A	E	V	D	S	V	G	I	L	G	S	T	G	I	Y	X	Y	L	T	R	E	E	R	R	R	A	I	E	A	A	A	T	I	L	R	G	R	R	T	L	X	A	G
Template Known Secondary structure			G	G	G	G	G											B		T	T			B															T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	E	F	I	P	G	N	G	I	P	V	D	S	V	V	I	D	R	K	I	N	P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	L	W	R	S	D	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	G	L	V	S	I	I	E	P	V	V	R	P	P	R	R	G	D
Query Conservation
Alig confidence								.	.	.	.	.	.							.	.	.	.																																							.	.	.							.	.
Template Conservation								.	.	.	.	.	.							.	.	.	.																																							.	.	.							.	.
Template Sequence		I	G	A	L	R	T	.	.	.	.	.	.	D	E	A	V	A	L	.	.	.	.	A	K	D	A	E	A	A	G	A	D	A	L	L	L	A	P	V	S	Y	T	P	L	T	Q	E	E	A	Y	H	H	F	A	A	V	A	G	A	T	.	.	.	A	L	P	L	A	I	.	.	Y	N	N	P	T	T	T	R	F
Template Known Secondary structure					S	S		.	.	.	.	.	.							.	.	.	.								T		S									S	S																			.	.	.	S	S					.	.				G	G	G	T
Template Predicted Secondary structure								.	.	.	.	.	.							.	.	.	.																																							.	.	.							.	.
Template SS confidence
		110	.	.	.	.	.							.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.			.	.	.	.	170	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	D	R	E	Q	A	I	I	D	A	A	K	E	L	G	D	S	G	A	D	L	Y	K	V	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V	A	M	T	A	G	A	S	G	F
Query Conservation
Alig confidence					.					.	.	.																	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation					.					.	.	.																	.	.	.	.	.																												.	.	.	.	.	.
Template Sequence		T	F	S	.	D	E	L	L	.	.	.	V	R	L	A	Y	I	P	N	I	R	A	I	K	X	P	L	.	.	.	.	.	P	A	D	A	D	Y	A	G	E	L	A	R	L	R	P	K	L	S	D	D	F	A	I	G	Y	S	G	.	.	.	.	.	.	D	W	G	C	T	D	A	T	L	A	G	G	D	T	W
Template Known Secondary structure					.					.	.	.					T	S	T	T									.	.	.	.	.		T	T											T	T	T	S		T	T								.	.	.	.	.	.										T	T		S
Template Predicted Secondary structure					.					.	.	.																	.	.	.	.	.																												.	.	.	.	.	.
Template SS confidence
		175	.	.		.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	R	A	V	W	A	S	V	V	G	L	P	D	N	E	L	M	L	R	D	V	C	A	P	K	L	Q	Q	L	G	D	I	V	D	E	M	M	A
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		Y	S	V	V	A	G	L	L	P	V	P	A	L	Q	L	X	R	A	A	Q	A	G	N	.	A	E	E	A	K	R	L	D	A	T	F	Q	P	L	W	A
Template Known Secondary structure				S	G	G	G	T														T	T		.											T
Template Predicted Secondary structure																									.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions