Return to main results Retrieve Phyre Job Id

Job DescriptionP32141
Confidence46.03%DateThu Jan 5 11:49:28 GMT 2012
Rank438Aligned Residues146
% Identity14%Templatec2nx9B_
PDB info PDB header:lyaseChain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   139140.........150.........160.........170.........180.........190.........200.........210........
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  LDMVKEFNELCHSHGLVSIIEPVVRPPRRGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGPQQELLCASQRLNDHI
Query Conservation        
 
 
   
 


 
              
  
  


   





 
   

                    
Alig confidence 






























....





















.





















Template Conservation         
  

  
  
   
         .... 
     
  
   


 
 
 .

 
   
  
  

  

   
Template Sequence  VRNMQQALQAVKKMGAHAQGTLCYTTSPVHN. . . . LQTWVDVAQQLAELGVDSIALK. DMAGILTPYAAEELVSTLKKQV
Template Known Secondary structure  T




TT

....TT
S.SSS


S
Template Predicted Secondary structure 









....




.







Template SS confidence 















































































   126...130.........140.........150...... ...160.........170........ .180.........190.........200
 
   219220.........230.........240.........250.........260.........270 .........280.........
Predicted Secondary structure 



















.........
Query SS confidence 



















































. . . . . . . . .


















Query Sequence  NMPWVILSSGVDEKLFPRAVRVAMTAGASGFLAGRAVWASVVGLPDNELMLR. . . . . . . . . DVCAPKLQQLGDIVDEMMA
Query Conservation   

 





   
 
   
  
  


 

  





           

.........   
 

            
Alig confidence 


.















































.........


















Template Conservation   
 .
  
 


 


 

 



 


  

 

 


   

   
 

  
   
 




   
  

     
  
Template Sequence  DVE. LHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRK
Template Known Secondary structure 
S
.

TTS
TT
SB
GGG
STTS

BTTSTT




Template Predicted Secondary structure 

.




























Template SS confidence 















































































   201.. ......210.........220.........230.........240.........250.........260.........270.........
 
   290
Predicted Secondary structure 
Query SS confidence 
Query Sequence  K
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  K
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 
   280
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions