Job Description P32141 Confidence 94.62% Date Thu Jan 5 11:49:28 GMT 2012 Rank 180 Aligned Residues 239 % Identity 10% Template c2hmcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens Resolution 1.90 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																						.																												.	.	.	.	.	.	.	.
Query SS confidence																						.																												.	.	.	.	.	.	.	.
Query Sequence		R	E	A	M	R	M	M	F	A	A	A	G	A	P	A	P	V	A	D	S	.	V	L	T	D	F	K	V	N	A	A	K	A	L	S	P	Y	A	S	A	I	L	V	D	Q	Q	F	C	.	.	.	.	.	.	.	.	Y	R	Q	V	V	E	Q	N	A	I	A	K	S	C	A	M	I	V	A	A	D	E	F	I
Query Conservation																						.																												.	.	.	.	.	.	.	.
Alig confidence																						.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	I	F	S	G	V	I	P	A	L	X	T	P	C	R	Q	D	R	T	P	D	F	D	A	L	V	R	K	G	K	E	L	I	A	D	G	X	S	A	V	V	Y	C	G	S	X	G	D	W	P	L	L	T	D	E	Q	R	X	E	G	V	E	R	L	V	K	A	G	I	P	V	I	V	G	T	G	A	V	N
Template Known Secondary structure				T	T	S					B					B		T	T	S	S	B															T	T							S	S	G	G	G	T	G	G	G	S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		P	G	N	G	I	P	V	D	S	V	V	I	D	R	K	I	N	P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	.	L	W	R	S	D	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	G	L	V	S	I	I	E	P	V	V	R	P	P	R	R	G	D	K	F	D	R
Query Conservation																																			.
Alig confidence			.	.	.	.	.	.							.	.	.	.																	.																						.	.									.	.													.
Template Conservation			.	.	.	.	.	.							.	.	.	.																																							.	.									.	.													.
Template Sequence		T	.	.	.	.	.	.	A	S	A	V	A	H	.	.	.	.	A	V	H	A	Q	K	V	G	A	K	G	L	X	V	I	P	R	V	L	S	R	G	S	V	I	A	A	Q	K	A	H	F	K	A	I	L	S	A	.	.	A	P	E	I	P	A	V	I	.	.	Y	N	S	P	Y	Y	G	F	A	T	R	A	.
Template Known Secondary structure			.	.	.	.	.	.							.	.	.	.								T		S									S	S	S	T	T																.	.	S	T	T	S					.	.			B	G	G	G	T	B					.
Template Predicted Secondary structure			.	.	.	.	.	.							.	.	.	.																																							.	.									.	.													.
Template SS confidence
		83							.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	I	I	D	A	A	K	E	L	G	D	S	G	A	D	L	Y	K	V	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V	A	M	T	A	G	A	S	G	F	L	A	G	R
Query Conservation
Alig confidence												.	.	.	.	.									.	.	.	.	.																														.	.	.	.	.
Template Conservation												.	.	.	.	.									.	.	.	.	.																														.	.	.	.	.
Template Sequence		D	L	F	F	A	L	R	A	E	H	.	.	.	.	.	K	N	L	V	G	F	K	E	.	.	.	.	.	F	G	G	P	A	D	X	R	Y	A	A	E	N	I	T	S	R	D	D	E	V	T	L	X	I	G	V	D	T	.	.	.	.	.	A	V	V	H	G	F	V	N	C	G	A	T	G	A	I	T	G	I
Template Known Secondary structure												.	.	.	.	.	T	T							.	.	.	.	.		S												T	S		S	S	S	S							S	G	G	.	.	.	.	.	G								S								S	G
Template Predicted Secondary structure												.	.	.	.	.									.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		254	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		A	V	W	A	S	V	V	.	.	G	L	P	D	N	E	L	M	L	R	D	V	C	A	P	K	L	Q	Q	L	G	D	I	V	D	E	M	M	A	K	R	R
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		G	N	V	L	P	K	E	V	I	H	L	C	K	L	S	Q	A	A	A	K	G	D	A	D	A	R	A	R	A	L	E	L	E	Q	A	L	A	V	L	S	S
Template Known Secondary structure		G	G	T	S															T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions