Job Description P32141 Confidence 94.38% Date Thu Jan 5 11:49:28 GMT 2012 Rank 185 Aligned Residues 139 % Identity 15% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	L	W	R	S	D	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	G	L	V	S	I	I	E	P	V	V	R	P	P	R	R	G	D	K	F	D	R	E	Q	A	I	I	D	A	A	K	E	L	G	D	S	G	A	D	L
Query Conservation
Alig confidence																.	.	.	.	.							.	.	.	.																						.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																.	.	.	.	.							.	.	.	.																						.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		C	R	L	S	R	E	K	G	I	D	G	F	I	V	.	.	.	.	.	P	D	L	P	P	E	.	.	.	.	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	.	.	.	.	.	.	.	.	P	T	S	T	R	K	R	I	K	L	I	C	E	A	A	D	E	M	.	.	.	T
Template Known Secondary structure								T	T							.	.	.	.	.	T	T					.	.	.	.												T	T									.	.	.	.	.	.	.	.	T	T														S	S		.	.	.
Template Predicted Secondary structure																.	.	.	.	.							.	.	.	.																						.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	V	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V	A	M	T	A	G	A	S	G	F	L	A	G	R	A	V	W	A	S	V	V	G	L	P	D	N	E	L	M	L	R	D
Query Conservation
Alig confidence									.	.	.	.	.																																	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	V	S	V	T	G	.	.	.	.	.	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	.	.	.	.	.	E	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	K	.	.	.	.	.	.	.	.	.	.	L	A	G	Q
Template Known Secondary structure					S	S			.	.	.	.	.																	S						S	S			S						.	.	.	.	.				T	T	S	S											.	.	.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure									.	.	.	.	.																																	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	A	P	K	L	Q	Q	L	G	D	I	V	D	E	M	M	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	I	E	D	L	G	N	L	V	K	E	L	K	E	G	L	R	E
Template Known Secondary structure		T															T	T	B
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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