Job Description P32141 Confidence 96.08% Date Thu Jan 5 11:49:28 GMT 2012 Rank 144 Aligned Residues 144 % Identity 13% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.															.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																					.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																					.	.	.
Query Sequence		N	P	L	Q	I	K	Q	D	G	G	K	A	L	K	L	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	R	S	D	.	.	.	E	D	A	Q	Q	R	L	D	M	V	K	E	F	N	E	L	C	H	S	H	.	.	.	G	L	V	S	I	I	E	P	V	V	R	P	P	R	R	G	D	K
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																					.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																					.	.	.
Template Conservation
Template Sequence		A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q
Template Known Secondary structure									T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.											.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	R	E	Q	A	I	I	D	A	A	K	E	L	G	D	S	G	A	D	L	Y	K	V	.	.	.	.	.	.	.	.	.	.	E	M	P	L	Y	G	K	G	P	Q	Q	E	L	L	C	A	S	Q	R	L	N	D	H	I	N	M	P	W	V	I	L	S	S	G	V	D	E	K	L	F	P	R	A	V	R	V
Query Conservation																										.	.	.	.	.	.	.	.	.	.
Alig confidence				.																						.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation				.																																																																								.	.	.	.
Template Sequence		I	E	.	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	.	.	.	.	I	E
Template Known Secondary structure				.	T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S						S									.	.	.	.
Template Predicted Secondary structure				.																																																																								.	.	.	.
Template SS confidence
		234	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.
		241	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		A	M	T	A	G	.	A	S	G	F	L	A	G	R	A	V	W	A	S	V
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	D	P
Template Known Secondary structure					T	T	S		S	B				S							T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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