Job Description P09835 Confidence 99.93% Date Thu Jan 5 11:02:31 GMT 2012 Rank 3 Aligned Residues 245 % Identity 13% Template c3d2rB_ PDB info PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp Resolution 2.03 Å

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		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	L	L	S	L	L	V	Q	S	L	T	G	L	L	L	G	A	G	I	Q	R	L	R	E	L	N	Q	S	L	Q	K	E	L	A	R	N	Q	H	L	A	E	R	L	L	E	T	E	E	S	V	R	R	D	V	A	R	E	L	H	D	D	I	G	Q	T	I	T	A	I	R	T	Q	A	G	I	V	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	V	R	L	A	N	I	L	K	E	I	D	I	L	P	T	Q	L	V	N	T	S	S	V	Q	L	V	K	S	W	Y	I	Q	S	L	M	D	L	V	E	F	H	E	K	S	P	D	D	Q	K	A	L	S	D	F	V	D	T	L	I	K	V	R	N	R	H	H	N	V	V	P	T	M	A	Q	G	I	I	E
Template Known Secondary structure															T	S						T	S																			G	G	G	G	S		T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
								333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370											.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	A	A	D	N	A	S	V	K	Q	S	G	Q	L	I	E	Q	L	S	L	G	V	Y	D	A	V	R	R	L	L	G	R	L	R	P	R	Q	L	.	.	.	.	.	.	.	.	.	.	D	D	L	T	L	E	Q	A	I	R	S	L	M	R	E	M	E	L	E	G	R	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		Y	K	A	C	T	V	D	P	V	T	N	Q	N	L	Q	Y	F	L	D	R	F	Y	M	N	R	I	S	T	R	M	L	M	N	Q	H	I	L	I	F	S	D	S	Q	T	G	N	P	S	H	I	G	S	I	D	P	N	C	D	V	V	A	V	V	Q	D	A	F	E	C	S	R	M	L	C	D	Q	Y	Y	L	S
Template Known Secondary structure									T	T	T																															S	S					T	T	S	B	T	T	B																										S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
						392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.									430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																							.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																							.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	G	I	V	S	H	L	E	W	R	I	D	E	S	A	L	S	E	N	Q	R	V	T	L	F	R	V	C	Q	E	G	L	N	N	I	V	K	H	A	.	.	.	.	.	.	.	.	D	A	S	A	V	T	L	Q	G	W	Q	Q	D	E	R	L	M	L	V	I	E	D	D	G	S	G	L	P	P	G
Query Conservation		.	.	.	.																																							.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	E	L	K	L	T	Q	V	N	G	K	F	P	D	Q	P	I	H	I	V	Y	V	P	S	H	L	H	H	M	L	F	E	L	F	K	N	A	M	R	A	T	V	E	H	Q	E	N	Q	P	S	L	T	P	I	E	V	I	V	V	L	G	K	E	D	L	T	I	K	I	S	D	R	G	G	G	V	P	L	R
Template Known Secondary structure												S	S	S	T	T	S																														T	T	T	S	S	S												S	S										S					G	G
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		460	.																		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	G	F	G	L	T	G	M	R	E	R	V	T	A	L	G	G	T	L	H	I	S	C	L	H	.	.	G	T	R	V	S	V	S	L	P	Q
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		I	I	D	R	L	F	S	Y	T	Y	S	T	A	P	T	P	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	K	Y	F	Q	G	D	L	N	L	Y	S	L	S	G	Y	G	T	D	A	I	I	Y	L	K	A
Template Known Secondary structure		G	T	T	G	G	G	S	T	T			S	S						S	S	S														T	T									T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions