Job Description P09835 Confidence 99.90% Date Thu Jan 5 11:02:31 GMT 2012 Rank 6 Aligned Residues 245 % Identity 15% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	L	L	S	L	L	V	Q	S	L	T	G	L	L	L	G	A	G	I	Q	R	L	R	E	L	N	Q	S	L	Q	K	E	L	A	R	N	Q	H	L	A	E	R	L	L	E	T	E	E	S	V	R	R	D	V	A	R	E	L	H	D	D	I	G	Q	T	I	T	A	I	R	T	Q	A	G	I	V	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	V	R	L	A	N	T	M	R	E	V	N	L	L	P	D	N	L	L	N	R	P	S	V	G	L	V	Q	S	W	Y	M	Q	S	F	L	E	L	L	E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T	M	A	Q	G	V	I	E
Template Known Secondary structure														T	T	S						T	S																			G	G	G	G			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
									333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.												.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	L	A	A	D	N	A	S	V	K	Q	S	G	Q	L	I	E	Q	L	S	L	G	V	Y	D	A	V	R	R	L	L	G	R	L	R	P	R	Q	L	D	D	.	.	.	.	.	.	.	.	.	.	.	L	T	L	E	Q	A	I	R	S	L	M	R	E	M	E	L	E	G	R	G	I	.
Query Conservation		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F	R	M	L	I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y
Template Known Secondary structure																																										S			S	S		S	S	T	T	S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
										394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.										430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	S	H	L	E	W	R	I	D	E	S	A	L	S	E	N	Q	R	V	T	L	F	R	V	C	Q	E	G	L	N	N	I	V	K	H	A	.	.	.	.	.	.	.	.	.	D	A	S	A	V	T	L	Q	G	W	Q	Q	D	E	R	L	M	L	V	I	E	D	D	G	S	G	L
Query Conservation		.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	A	P	E	L	E	V	E	E	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M	L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	D	L	S	I	K	I	S	D	L	G	G	G	V
Template Known Secondary structure		S												T	T	S	T	T	S																															T	T		S	S													S	S										S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		457	.	.											460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		P	P	G	.	.	.	.	.	.	.	.	.	.	S	G	Q	Q	G	F	G	L	T	G	M	R	E	R	V	T	A	L	G	G	T	L	H	I	S	C	L	H	.	.	G	T	R	V	S	V	S	L	P	Q
Query Conservation					.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	L	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A
Template Known Secondary structure							G	G	G	G		T	T	T					T	T												T	T									T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions