Return to main results Retrieve Phyre Job Id

Job DescriptionP23849
Confidence54.93%DateThu Jan 5 11:39:57 GMT 2012
Rank11Aligned Residues84
% Identity13%Templated1xl4a2
SCOP infoVoltage-gated potassium channels Voltage-gated potassium channels Voltage-gated potassium channels
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   66...70.........80.........90..... ....100.........110.........120.........130.........140
Predicted Secondary structure 




.....












Query SS confidence 





























. . . . .












































Query Sequence  QLRTRDGFIIIVMFWILFSVISAFPLWIDS. . . . . ELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAYLYYRSQLNFI
Query Conservation   
            


    



     .....    
  

 




  






              
  
  
Alig confidence 





























.....




















...


















.
Template Conservation                       

                    
 


  
 



...



 
 
    
      . 
Template Sequence  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG. . . YGKLIPIGPLANTLVTLEA. L
Template Known Secondary structure  S
T
S
STTS
TT
TT

...
SSS


.
Template Predicted Secondary structure 







...





.
Template SS confidence 















































































   43......50.........60.........70.........80.........90........ .100.........110....... .
 
   141........150...
Predicted Secondary structure 
Query SS confidence 












Query Sequence  GGLGVIVLAVAVL
Query Conservation 





    


Alig confidence 












Template Conservation   
    
   
 
Template Sequence  CGMLGLAVAASLI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 












   119120.........130.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions