Job Description P23849 Confidence 100.00% Date Thu Jan 5 11:39:57 GMT 2012 Rank 1 Aligned Residues 464 % Identity 42% Template c3pjzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:potassium uptake protein trkh; PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus Resolution 3.51 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	R	V	V	T	H	M	C	G	F	L	V	W	L	Y	S	L	S	M	L	P	P	M	V	V	A	L	F	Y	K	E	K	S	L	F	V	F	F	I	T	F	V	I	F	F	C	I	G	G	G	A	W	Y	T	T	K	K	S	G	I	Q	L	R	T	R	D	G	F	I	I	I	V	M	F	W	I	L	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	R	S	I	I	R	I	V	G	L	L	L	A	L	F	S	V	T	M	L	A	P	A	L	V	A	L	L	Y	R	D	G	A	G	V	P	F	V	T	T	F	F	V	L	L	F	C	G	A	M	C	W	F	P	N	R	R	H	K	H	E	L	K	S	R	D	G	F	L	I	V	V	L	F	W	T	V	L	G
Template Known Secondary structure																			T	T	T					T					S	S																			T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	A	F	P	L	W	I	D	S	E	L	N	L	T	F	I	D	A	L	F	E	G	V	S	G	I	T	T	T	G	A	T	V	I	D	D	V	S	S	L	P	R	A	Y	L	Y	Y	R	S	Q	L	N	F	I	G	G	L	G	V	I	V	L	A	V	A	V	L	P	L	L	G	I	G	G	A	K	L	Y
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		S	A	G	S	L	P	F	L	I	A	D	N	P	N	I	S	V	T	D	A	F	F	E	S	F	S	A	L	T	T	T	G	A	T	V	I	V	G	L	D	E	L	P	K	A	I	L	F	Y	R	Q	F	L	Q	W	F	G	G	M	G	I	I	V	L	A	V	A	I	L	P	V	L	G	I	.	.	.	.	.	.
Template Known Secondary structure													S	S																T	T										S	S	S																					T	T	T	T	S	S	T	T	T	T	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	E	M	P	G	P	F	K	D	D	K	L	T	P	R	L	A	D	T	S	R	T	L	W	I	T	Y	S	L	L	G	I	A	C	I	V	C	Y	R	L	A	G	M	P	L	F	D	A	I	C	H	G	I	S	T	V	S	L	G	G	F	S	T	H	S	E	S	I	G	Y	F	N	N	Y	L	V	E	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	G	M	T	P	R	I	A	E	T	A	K	A	L	W	Y	I	Y	L	S	L	T	I	A	C	A	V	A	F	W	L	A	G	M	T	P	F	D	A	I	S	H	S	F	S	T	I	A	I	G	G	F	S	T	H	D	A	S	M	G	Y	F	D	S	Y	A	I	N	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.					S	S	S																										T			S					T	T	T					T	T					S	S	T	T	G	G	G	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																								.	.																															.
Query SS confidence																								.	.																															.
Query Sequence		A	G	S	F	S	L	L	S	A	F	N	F	T	L	W	Y	I	V	I	S	R	K	.	.	T	I	K	P	L	I	R	D	I	E	L	R	F	F	L	L	I	A	L	G	V	I	I	V	T	S	F	Q	V	W	.	H	I	G	M	Y	D	L	H	G	S	F	I	H	S	F	F	L	A	S	S	M	L	T	D	N
Query Conservation																								.	.																															.
Alig confidence																								.	.																															.
Template Conservation
Template Sequence		T	V	V	F	L	L	I	S	A	C	N	F	T	L	H	F	A	A	F	A	S	G	G	V	H	P	K	Y	Y	W	K	D	P	E	F	R	A	F	I	F	I	Q	V	L	L	F	L	V	C	F	L	L	L	L	K	H	H	S	Y	T	S	P	Y	D	A	F	D	Q	A	L	F	Q	T	V	S	I	S	T	T	A
Template Known Secondary structure										T	S									T	T	T	S	T	T							T	S																								T	T			S	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	T	Q	D	Y	A	S	W	P	T	H	T	I	V	F	L	L	L	S	S	F	F	G	G	C	I	G	S	T	C	G	G	I	K	S	L	R	F	L	I	L	F	K	Q	S	K	H	E	I	N	Q	L	S	H	P	R	A	L	L	S	V	N	V	G	G	K	I	V	T	D	R	V	M	R	S	V	W	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	T	T	T	G	F	A	D	W	P	L	F	L	P	V	L	L	L	F	S	S	F	I	G	G	C	A	G	S	T	G	G	G	M	K	V	I	R	I	L	L	L	T	L	Q	G	A	R	E	L	K	R	L	V	H	P	R	A	V	Y	T	I	K	V	G	G	S	A	L	P	Q	R	V	V	D	A	V	W	G
Template Known Secondary structure					S				S	S			T										T	T	S		S		T	T	S	S			S	S																						S	S	S						S	S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	F	L	Y	T	L	F	T	V	F	F	I	L	V	L	N	G	M	G	Y	D	F	L	T	S	F	A	T	V	A	A	C	I	N	N	M	G	L	G	F	G	A	T	A	S	S	F	G	V	L	N	D	I	A	K	C	L	M	C	I	A	M	I	L	G	R	L	E	I	Y	P	V	I	I	L	F	S	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	S	A	Y	A	L	V	F	V	V	C	M	L	G	L	I	A	T	G	M	D	E	L	S	A	F	S	A	V	A	A	T	L	N	N	L	G	P	G	L	G	E	V	A	L	H	F	G	D	V	N	D	K	A	K	W	V	L	I	V	S	M	L	F	G	R	L	E	I	F	T	L	L	I	L	L	T	P	T
Template Known Secondary structure																					S	S													T	T	T			S			S	S	S					S	S	S																	T	T	T					T	T	S		S	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		482	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	W	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		482	.	.