Job Description P32703 Confidence 99.86% Date Thu Jan 5 11:50:22 GMT 2012 Rank 1 Aligned Residues 364 % Identity 14% Template c1zcdA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa Resolution 3.45 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		L	I	M	T	L	V	V	S	L	S	G	V	V	T	R	V	M	P	F	Q	I	P	L	P	L	M	Q	I	A	I	G	A	L	L	A	W	P	T	F	G	L	H	V	E	F	D	P	.	E	L	F	L	V	L	F	I	P	P	L	L	F	A	D	G	W	K	T	P	T	R	E	F	L	E	H	G	R	E	I	F
Query Conservation																																																	.
Alig confidence																	.	.																															.
Template Conservation																	.	.
Template Sequence		G	I	I	L	I	I	A	A	I	L	A	M	I	M	A	.	.	N	S	G	A	T	S	G	W	Y	H	D	F	L	E	T	P	V	Q	L	R	V	G	S	L	E	I	N	K	N	M	L	L	W	I	N	D	A	L	M	A	V	F	F	L	L	V	G	L	E	V	K	R	E	L	M	Q	G	S	L	A	S	L	R
Template Known Secondary structure																	.	.			S	S	S								T	T								T	T																																	S	T	T	T	S	S	T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		G	L	A	L	A	L	V	V	V	T	V	V	G	I	G	F	L	I	Y	W	V	V	P	G	I	P	L	I	P	A	F	A	L	A	A	V	L	S	P	T	D	A	V	A	L	S	G	I	V	G	E	G	R	.	.	I	P	K	K	I	M	G	I	L	Q	G	E	A	L	M	N	D	A	S	G	L	V	S	L	K
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		Q	A	A	F	P	V	I	A	A	I	G	G	M	I	V	P	A	L	L	Y	L	A	F	N	Y	A	D	P	I	T	R	E	G	W	A	I	P	A	A	T	D	I	A	F	A	L	G	V	L	A	L	L	G	S	R	V	P	L	A	L	K	I	F	L	M	A	L	A	I	I	D	D	L	G	A	I	I	I	I	A
Template Known Secondary structure		T	S											T	T	T	T					G	G	G			S	S	T	T					T	S	S	S	S													S	S		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	V	A	V	A	M	G	T	M	I	F	T	V	G	G	A	T	V	E	F	M	K	V	A	I	G	G	I	L	A	G	F	V	V	S	W	L	Y	G	R	S	L	R	F	L	S	R	W	G	G	D	E	P	A	T	Q	I	V	L	L	F	L	L	P	F	A	S	Y	L	I	A	E	H	I	G	V	S	G	I
Query Conservation
Alig confidence				.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	.	.	.	.	.	Y	T	N	D	L	S	M	A	S	L	G	V	A	A	V	A	I	A	V	L	A	V	L	N	L	C	G	A	R	R	T	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	V	G	V	V	L	W	T	A	V	L	K	S	G	V	H	A	T
Template Known Secondary structure				.	.	.	.	.	S																									T	T				T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	S
Template Predicted Secondary structure				.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	V	A	A	G	M	T	I	T	R	S	G	V	M	R	R	A	P	L	A	M	R	L	R	A	N	S	T	W	A	M	L	E	F	V	F	N	G	M	V	F	L	L	L	G	L	Q	L	P	G	I	L	E	T	S	L	M	A	A	E	I	D	P	N	V	E	I	W	M	L	F	T	N	I	I	L	I	Y
Query Conservation
Alig confidence																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	G	V	I	V	G	F	F	I	P	L	K	E	K	H	G	R	.	S	P	A	K	R	L	E	H	V	L	H	P	W	V	A	Y	L	I	L	P	L	F	A	F	A	N	A	G	V	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	V	T	L	D	G	L	T	S	I	L	P	L	G	I	I
Template Known Secondary structure											S				G	G	G	S	S	.																	T															.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				T					S	S	T	T	T	T
Template Predicted Secondary structure																				.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	A	L	M	L	V	R	F	G	W	L	W	T	M	K	K	F	S	N	R	F	L	K	K	K	P	M	E	F	G	S	W	T	T	R	E	I	L	I	A	S	F	.	A	G	V	R	G	A	I	T	L	A	G	V	L	S	I	P	L	L	L	P	D	G	N	V	F	P	A	R	Y	E	L	V	F	L	A	A	G
Query Conservation																																												.
Alig confidence																												.	.															.													.											.	.	.	.	.	.	.
Template Conservation																												.	.																												.											.	.	.	.	.	.	.
Template Sequence		A	G	L	L	I	G	K	P	L	G	I	S	L	F	C	W	L	A	L	R	L	K	L	A	H	L	.	.	P	E	G	T	T	Y	Q	Q	I	M	V	V	G	I	L	C	G	I	G	F	T	M	S	I	F	I	A	.	S	L	A	F	G	S	V	D	P	E	.	.	.	.	.	.	.	L	I	N	W	A	K	L
Template Known Secondary structure							T	T	G	G	G	S	T	T					T	S	S		T	T	T			.	.			S			G	G	G	G	T	T					T	T											.				S	T	T	S	S		S	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																												.	.																												.											.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.								.	.	.	360	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	F	S	L	F	V	G	V	V	M	L	P	I	L	L	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	L	V	G	S	I	S	S	A	V	I	G	Y	S	W	L	R	V
Template Known Secondary structure									T	T	T	S	T	T	T	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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